Rroxscaffold_4G00317170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000483
Physical Location & Seq
Forward (+)
42317070 .. 42319595
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317170.1

Sequence Viewer

Length: 690 bp
ATGGAGCGACCCGCGAGCCTGTTACGAGCTCAACCAAAGAAACCGAGGTCGTGCGACGTCGGAGCTGCAAATTCGGCCGGGTCGAGAAAGCGTAAGCGGCGCCGCCTTGCTGCACCACTTTGGGCTCGAATCGTCGACGGCGACCACCACGGGGACGATCGGAAGGAGGAGGCGACCTGGCCGGTGAAGTTTCGTCGCCGGAGGTGGCCGGAGGGCGGAAGTTACGGCCGGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCGGGAGATGCCGCCTCGGTCTAAGCGAGTTTGGGCCGATCGAGGACAAAAACGTCTTCTTTTGGTTCCCGAACCTCAAATCCCGAGAGAGCCAACGGATGAAGGCATTTCGGAAAGTCGGGTTGGCGGATCTCTCGACCTCGACTTTGGACCCGCAAGTTCGGCGGATGAAGGTGGATCCATTGCTCGAACTTTGGTTCCACGCGATCCAATAGGTGCCGATAGATCCGTCGATCTATCTTTTGGGTCAAACGTCAACTATCATGTTGACCCATACTCCACTTCACCTTTCAACAACAACAACGGTACTACCTCCTTTGGCACAACGGAGGTCAACCATCCATGGAACAAAGAGGAGGAGATCAGCGGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.56

Weight (kDa)

10.0

Isoelectric Point (pI)

63.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 312
AatII GACGTC 1 cut(s) 60
AccB1I GGYRCC 2 cut(s) 99, 476
AccI GTMKAC 1 cut(s) 135
AccII CGCG 2 cut(s) 14, 465
AciI CCGC 9 cut(s) 12, 97, 103, 216, 272, 387, 414, 425, 627
AclWI GGATC 5 cut(s) 397, 432, 445, 461, 480
AcoI YGGCCR 4 cut(s) 75, 179, 206, 226
AcsI RAATTY 1 cut(s) 70
AcyI GRCGYC 2 cut(s) 57, 100
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 3 cut(s) 151, 215, 662
AgsI TTSAA 1 cut(s) 553
AjnI CCWGG 1 cut(s) 176
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AloI GAACNNNNNNTCC 4 cut(s) 324, 356, 442, 474
AluBI AGCT 2 cut(s) 29, 65
AluI AGCT 2 cut(s) 29, 65
Alw21I GWGCWC 1 cut(s) 31
AlwI GGATC 5 cut(s) 397, 432, 445, 461, 480
Ama87I CYCGRG 2 cut(s) 251, 343
AoxI GGCC 5 cut(s) 75, 179, 206, 226, 294
ApeKI GCWGC 2 cut(s) 65, 110
ApoI RAATTY 1 cut(s) 70
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 294, 410
AsuC2I CCSGG 2 cut(s) 79, 230
AsuHPI GGTGA 2 cut(s) 196, 537
AvaI CYCGRG 2 cut(s) 251, 343
AvaII GGWCC 1 cut(s) 410
BamHI GGATCC 1 cut(s) 437
BanI GGYRCC 2 cut(s) 99, 476
BanII GRGCYC 2 cut(s) 31, 127
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 2 cut(s) 52, 97
BccI CCATC 1 cut(s) 606
BceAI ACGGC 2 cut(s) 154, 241
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 2 cut(s) 79, 230
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 5 cut(s) 66, 98, 103, 111, 272
BlsI GCNGC 5 cut(s) 67, 99, 104, 112, 273
Bme1390I CCNGG 3 cut(s) 79, 178, 230
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 2 cut(s) 251, 343
BmgT120I GGNCC 2 cut(s) 294, 410
BmiI GGNNCC 6 cut(s) 101, 327, 412, 439, 459, 478
BmrFI CCNGG 3 cut(s) 79, 178, 230
BmsI GCATC 1 cut(s) 258
BpiI GAAGAC 1 cut(s) 308
BpuMI CCSGG 2 cut(s) 79, 230
BsaHI GRCGYC 2 cut(s) 57, 100
BsaJI CCNNGG 5 cut(s) 44, 148, 229, 275, 602
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 215, 662
Bse118I RCCGGY 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 441
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 5 cut(s) 44, 148, 229, 275, 602
BseGI GGATG 3 cut(s) 364, 433, 598
BseLI CCNNNNNNNGG 3 cut(s) 151, 215, 662
BseMI GCAATG 1 cut(s) 441
BseRI GAGGAG 3 cut(s) 182, 629, 632
BseX3I CGGCCG 2 cut(s) 75, 226
BseXI GCAGC 2 cut(s) 52, 97
BsgI GTGCAG 1 cut(s) 96
Bsh1236I CGCG 2 cut(s) 14, 465
Bsh1285I CGRYCG 4 cut(s) 78, 160, 229, 301
BshFI GGCC 5 cut(s) 77, 181, 208, 228, 296
BshNI GGYRCC 2 cut(s) 99, 476
BsiEI CGRYCG 4 cut(s) 78, 160, 229, 301
BsiHKAI GWGCWC 1 cut(s) 31
BsiHKCI CYCGRG 2 cut(s) 251, 343
BsiSI CCGG 5 cut(s) 78, 182, 199, 209, 229
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 3 cut(s) 151, 215, 662
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 5 cut(s) 77, 181, 208, 228, 296
BsoBI CYCGRG 2 cut(s) 251, 343
Bsp1286I GDGCHC 2 cut(s) 31, 127
Bsp143I GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
Bsp19I CCATGG 1 cut(s) 602
BspACI CCGC 9 cut(s) 12, 97, 103, 216, 272, 387, 414, 425, 627
BspANI GGCC 5 cut(s) 77, 181, 208, 228, 296
BspFNI CGCG 2 cut(s) 14, 465
BspLI GGNNCC 6 cut(s) 101, 327, 412, 439, 459, 478
BspPI GGATC 5 cut(s) 397, 432, 445, 461, 480
BspT107I GGYRCC 2 cut(s) 99, 476
BsrDI GCAATG 1 cut(s) 441
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 5 cut(s) 44, 148, 229, 275, 602
BssMI GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
BssNI GRCGYC 2 cut(s) 57, 100
BssT1I CCWWGG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 1 cut(s) 647
BstACI GRCGYC 2 cut(s) 57, 100
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 282
BstDSI CCRYGG 2 cut(s) 148, 602
BstEII GGTNACC 1 cut(s) 679
BstF5I GGATG 3 cut(s) 364, 433, 598
BstFNI CGCG 2 cut(s) 14, 465
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 9 cut(s) 160, 301, 392, 440, 469, 488, 496, 624, 635
BstMBI GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
BstMCI CGRYCG 4 cut(s) 78, 160, 229, 301
BstMWI GCNNNNNNNGC 3 cut(s) 74, 97, 422
BstNI CCWGG 1 cut(s) 178
BstPI GGTNACC 1 cut(s) 679
BstSCI CCNGG 3 cut(s) 77, 176, 228
BstUI CGCG 2 cut(s) 14, 465
BstV1I GCAGC 2 cut(s) 52, 97
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 3 cut(s) 389, 437, 485
BstYI RGATCY 3 cut(s) 389, 437, 485
BstZI CGGCCG 2 cut(s) 75, 226
BsuRI GGCC 5 cut(s) 77, 181, 208, 228, 296
BtgI CCRYGG 2 cut(s) 148, 602
BtsCI GGATG 3 cut(s) 364, 433, 598
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 294, 410
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 567
CviAII CATG 2 cut(s) 524, 603
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 1 cut(s) 282
DinI GGCGCC 1 cut(s) 101
DpnI GATC 9 cut(s) 159, 300, 391, 439, 468, 487, 495, 623, 634
DpnII GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
DrdI GACNNNNNNGTC 1 cut(s) 312
DseDI GACNNNNNNGTC 1 cut(s) 312
EaeI YGGCCR 4 cut(s) 75, 179, 206, 226
EagI CGGCCG 2 cut(s) 75, 226
Eam1104I CTCTTC 1 cut(s) 647
EarI CTCTTC 1 cut(s) 647
EciI GGCGGA 3 cut(s) 231, 402, 440
Ecl136II GAGCTC 1 cut(s) 29
EclXI CGGCCG 2 cut(s) 75, 226
Eco130I CCWWGG 1 cut(s) 602
Eco24I GRGCYC 2 cut(s) 31, 127
Eco47I GGWCC 1 cut(s) 410
Eco52I CGGCCG 2 cut(s) 75, 226
Eco53kI GAGCTC 1 cut(s) 29
Eco88I CYCGRG 2 cut(s) 251, 343
Eco91I GGTNACC 1 cut(s) 679
EcoICRI GAGCTC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 679
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 602
EcoT38I GRGCYC 2 cut(s) 31, 127
EgeI GGCGCC 1 cut(s) 101
EheI GGCGCC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 602
FaeI CATG 2 cut(s) 527, 606
FaiI YATR 4 cut(s) 525, 535, 604, 662
FaqI GGGAC 1 cut(s) 167
FatI CATG 2 cut(s) 523, 602
FauI CCCGC 3 cut(s) 19, 421, 620
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 5 cut(s) 66, 98, 103, 111, 272
FokI GGATG 3 cut(s) 371, 440, 585
FriOI GRGCYC 2 cut(s) 31, 127
Fsp4HI GCNGC 5 cut(s) 66, 98, 103, 111, 272
GlaI GCGC 1 cut(s) 101
GluI GCNGC 5 cut(s) 66, 98, 103, 111, 272
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 5 cut(s) 77, 181, 208, 228, 296
HapII CCGG 5 cut(s) 78, 182, 199, 209, 229
HgaI GACGC 1 cut(s) 230
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 2 cut(s) 57, 100
Hin1II CATG 2 cut(s) 527, 606
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 4 cut(s) 136, 517, 529, 595
HindII GTYRAC 4 cut(s) 136, 517, 529, 595
HinfI GANTC 2 cut(s) 129, 259
HpaII CCGG 5 cut(s) 78, 182, 199, 209, 229
HphI GGTGA 2 cut(s) 196, 537
Hpy166II GTNNAC 4 cut(s) 136, 517, 529, 595
Hpy188I TCNGA 3 cut(s) 62, 162, 373
Hpy188III TCNNGA 6 cut(s) 84, 251, 263, 329, 343, 395
Hpy8I GTNNAC 4 cut(s) 136, 517, 529, 595
Hpy99I CGWCG 6 cut(s) 59, 62, 137, 140, 198, 494
HpyAV CCTTC 3 cut(s) 157, 356, 425
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4IV ACGT 3 cut(s) 57, 313, 513
HpyCH4V TGCA 3 cut(s) 68, 113, 660
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 97, 422
HpyF3I CTNAG 1 cut(s) 282
HpySE526I ACGT 3 cut(s) 57, 313, 513
Hsp92I GRCGYC 2 cut(s) 57, 100
Hsp92II CATG 2 cut(s) 527, 606
HspAI GCGC 1 cut(s) 100
KasI GGCGCC 1 cut(s) 99
Kzo9I GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
LmnI GCTCC 2 cut(s) 4, 62
LpnPI CCDG 8 cut(s) 32, 91, 163, 190, 195, 212, 222, 242
Lsp1109I GCAGC 2 cut(s) 52, 97
LweI GCATC 1 cut(s) 258
MaeII ACGT 3 cut(s) 57, 313, 513
MaeIII GTNAC 3 cut(s) 21, 221, 679
MalI GATC 9 cut(s) 159, 300, 391, 439, 468, 487, 495, 623, 634
MboI GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
MboII GAAGA 2 cut(s) 308, 634
MflI RGATCY 3 cut(s) 389, 437, 485
MhlI GDGCHC 2 cut(s) 31, 127
MluCI AATT 1 cut(s) 70
Mly113I GGCGCC 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 40, 269
MroXI GAANNNNTTC 1 cut(s) 641
MseI TTAA 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 627
MspI CCGG 5 cut(s) 78, 182, 199, 209, 229
MspR9I CCNGG 3 cut(s) 79, 178, 230
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 2 cut(s) 14, 465
MwoI GCNNNNNNNGC 3 cut(s) 74, 97, 422
NarI GGCGCC 1 cut(s) 100
NciI CCSGG 2 cut(s) 79, 230
NcoI CCATGG 1 cut(s) 602
NdeII GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
NlaIII CATG 2 cut(s) 527, 606
NlaIV GGNNCC 6 cut(s) 101, 327, 412, 439, 459, 478
PcsI WCGNNNNNNNCGW 3 cut(s) 80, 138, 283
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 2 cut(s) 129, 259
PkrI GCNGC 5 cut(s) 67, 99, 104, 112, 273
Ple19I CGATCG 2 cut(s) 160, 301
PluTI GGCGCC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 176
PspEI GGTNACC 1 cut(s) 679
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 6 cut(s) 101, 327, 412, 439, 459, 478
PspPI GGNCC 2 cut(s) 294, 410
PsuI RGATCY 3 cut(s) 389, 437, 485
PvuI CGATCG 2 cut(s) 160, 301
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SacI GAGCTC 1 cut(s) 31
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 5 cut(s) 66, 98, 103, 111, 272
Sau3AI GATC 9 cut(s) 157, 298, 389, 437, 466, 485, 493, 621, 632
Sau96I GGNCC 2 cut(s) 294, 410
ScrFI CCNGG 3 cut(s) 79, 178, 230
SduI GDGCHC 2 cut(s) 31, 127
SfaNI GCATC 1 cut(s) 258
SfoI GGCGCC 1 cut(s) 101
SgrDI CGTCGACG 1 cut(s) 134
SinI GGWCC 1 cut(s) 410
Sse9I AATT 1 cut(s) 70
SsiI CCGC 9 cut(s) 12, 97, 103, 216, 272, 387, 414, 425, 627
SspDI GGCGCC 1 cut(s) 99
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 3 cut(s) 77, 176, 228
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 1 cut(s) 566
TaiI ACGT 3 cut(s) 60, 316, 516
TaqI TCGA 9 cut(s) 83, 127, 135, 301, 396, 402, 448, 492, 635
TaqII GACCGA 1 cut(s) 267
TasI AATT 1 cut(s) 70
TauI GCSGC 3 cut(s) 100, 105, 274
TfiI GAWTC 2 cut(s) 129, 259
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TseI GCWGC 2 cut(s) 65, 110
TspDTI ATGAA 2 cut(s) 375, 444
TspGWI ACGGA 3 cut(s) 371, 478, 602
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 641
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.