Rroxscaffold_7G00191180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Forward (+)
31708866 .. 31709219
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191180.1

Sequence Viewer

Length: 354 bp
ATGAAGGCATTTCGGAAAGTCCGGGTTGGAGGATCTCTCGATCTCAACTTTGGACCCGCAAGTCCTACGGATGAAGGTGGATCCATCGCTGCGAACTTTGGTCCCAACGTTCCTACGGATGTCGATAGATCCATCGATCTAGCTTTTGGGTCAAACGTCAACTATCATGTTGACCCAAATTCCACTTTACCTTTCAACAACAACAACAATACTACCTCCTTCGACACAACGGGAGGTCAACCATCCATGGAACTAAGAGGAGGAGATCGGCGGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCGATAACTACTTCGAGAGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.65

Weight (kDa)

5.22

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 60
AciI CCGC 2 cut(s) 57, 271
AclI AACGTT 1 cut(s) 108
AclWI GGATC 4 cut(s) 40, 75, 88, 123
AcsI RAATTY 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 4 cut(s) 40, 75, 88, 123
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 53, 101
AsuC2I CCSGG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 53, 101
BamHI GGATCC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 76
BccI CCATC 3 cut(s) 92, 140, 250
BcnI CCSGG 1 cut(s) 23
BfaI CTAG 1 cut(s) 140
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 53, 101
BmgT120I GGNCC 2 cut(s) 53, 101
BmiI GGNNCC 3 cut(s) 55, 82, 103
BmrFI CCNGG 1 cut(s) 23
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 76, 124, 242
BseLI CCNNNNNNNGG 1 cut(s) 306
BseRI GAGGAG 2 cut(s) 273, 276
BseXI GCAGC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 135
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 87
Bsp143I GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 2 cut(s) 57, 271
BspDI ATCGAT 1 cut(s) 135
BspLI GGNNCC 3 cut(s) 55, 82, 103
BspPI GGATC 4 cut(s) 40, 75, 88, 123
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
BssT1I CCWWGG 1 cut(s) 246
Bst6I CTCTTC 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 254
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 3 cut(s) 76, 124, 242
BstKTI GATC 7 cut(s) 35, 43, 83, 131, 139, 268, 279
BstMBI GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 76
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 246
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 3 cut(s) 76, 124, 242
Cfr13I GGNCC 2 cut(s) 53, 101
ClaI ATCGAT 1 cut(s) 135
CviAII CATG 2 cut(s) 167, 247
CviJI RGCY 1 cut(s) 143
CviKI_1 RGCY 1 cut(s) 143
DdeI CTNAG 1 cut(s) 254
DpnI GATC 7 cut(s) 34, 42, 82, 130, 138, 267, 278
DpnII GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
DrdI GACNNNNNNGTC 1 cut(s) 60
DseDI GACNNNNNNGTC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 53, 101
Eco91I GGTNACC 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 170, 250
FaiI YATR 3 cut(s) 168, 248, 306
FaqI GGGAC 1 cut(s) 87
FatI CATG 2 cut(s) 166, 246
FauI CCCGC 2 cut(s) 64, 264
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 3 cut(s) 83, 131, 229
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 140
GluI GCNGC 1 cut(s) 90
HapII CCGG 1 cut(s) 22
Hin1II CATG 2 cut(s) 170, 250
HincII GTYRAC 3 cut(s) 160, 172, 239
HindII GTYRAC 3 cut(s) 160, 172, 239
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 3 cut(s) 160, 172, 239
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 38, 342
Hpy8I GTNNAC 3 cut(s) 160, 172, 239
HpyAV CCTTC 3 cut(s) 68, 229, 342
HpyCH4IV ACGT 2 cut(s) 108, 156
HpyCH4V TGCA 1 cut(s) 304
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 2 cut(s) 108, 156
Hsp92II CATG 2 cut(s) 170, 250
Kzo9I GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
LpnPI CCDG 1 cut(s) 35
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 1 cut(s) 140
MaeII ACGT 2 cut(s) 108, 156
MaeIII GTNAC 1 cut(s) 323
MalI GATC 7 cut(s) 34, 42, 82, 130, 138, 267, 278
MboI GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
MboII GAAGA 1 cut(s) 278
MflI RGATCY 3 cut(s) 32, 80, 128
MluCI AATT 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 8 cut(s) 23, 226, 227, 251, 254, 300, 304, 338
MroXI GAANNNNTTC 1 cut(s) 285
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 246
NdeII GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
NlaIII CATG 2 cut(s) 170, 250
NlaIV GGNNCC 3 cut(s) 55, 82, 103
PdmI GAANNNNTTC 1 cut(s) 285
PkrI GCNGC 1 cut(s) 91
Psp1406I AACGTT 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 323
PspN4I GGNNCC 3 cut(s) 55, 82, 103
PspPI GGNCC 2 cut(s) 53, 101
PsuI RGATCY 3 cut(s) 32, 80, 128
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 7 cut(s) 32, 40, 80, 128, 136, 265, 276
Sau96I GGNCC 2 cut(s) 53, 101
ScrFI CCNGG 1 cut(s) 23
SetI ASST 8 cut(s) 79, 111, 145, 159, 193, 218, 238, 353
SinI GGWCC 2 cut(s) 53, 101
Sse9I AATT 1 cut(s) 178
SsiI CCGC 2 cut(s) 57, 271
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 2 cut(s) 111, 159
TaqI TCGA 6 cut(s) 39, 123, 135, 222, 279, 341
TasI AATT 1 cut(s) 178
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 2 cut(s) 83, 131
VpaK11BI GGWCC 2 cut(s) 53, 101
XapI RAATTY 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.