Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002786.1

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

135289 .. 135564

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002786.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atggaaccacaaatccagcaaccaaccgaggatggaggaagcaacaaagccgccgggagtagtgttaacatgcttcgcaggcggagcgatactaggtggactcctactacagatcagataagaatcctcaaggagctttactacgacaagggagttaagtccccaactgcagagcagattcagaggatctgtctccagctgaaacagtatggaaagattgagggcaagaacgtctttttttggttccagaacctcaaggctcgggagaggcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

91

Amino Acids

10.65

Weight (kDa)

9.77

Isoelectric Point (pI)

69.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	51, 82
AclWI	GGATC	1 cut(s)	194
AloI	GAACNNNNNNTCC	1 cut(s)	29
AluBI	AGCT	2 cut(s)	136, 199
AluI	AGCT	2 cut(s)	136, 199
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	194
Ama87I	CYCGRG	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	55
AvaI	CYCGRG	1 cut(s)	261
BccI	CCATC	1 cut(s)	26
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	93
BfmI	CTRYAG	2 cut(s)	108, 168
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	2 cut(s)	6, 245
BmrFI	CCNGG	1 cut(s)	55
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	113, 239
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	122
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	54
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	112, 186
BspACI	CCGC	2 cut(s)	51, 82
BspLI	GGNNCC	2 cut(s)	6, 245
BspMAI	CTGCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	112, 186
Bst4CI	ACNGT	1 cut(s)	207
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	2 cut(s)	115, 189
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	2 cut(s)	112, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 84
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	53
BstSFI	CTRYAG	2 cut(s)	108, 168
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	50, 136, 199, 260
CviKI_1	RGCY	4 cut(s)	50, 136, 199, 260
DpnI	GATC	2 cut(s)	114, 188
DpnII	GATC	2 cut(s)	112, 186
EciI	GGCGGA	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	261
FaeI	CATG	1 cut(s)	73
FaiI	YATR	2 cut(s)	71, 210
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	179
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	3 cut(s)	100, 123, 178
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	54
Hpy166II	GTNNAC	2 cut(s)	67, 99
Hpy188I	TCNGA	2 cut(s)	117, 183
Hpy188III	TCNNGA	2 cut(s)	247, 263
Hpy8I	GTNNAC	2 cut(s)	67, 99
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	1 cut(s)	170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 84
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	112, 186
LmnI	GCTCC	2 cut(s)	84, 133
LpnPI	CCDG	5 cut(s)	29, 64, 67, 209, 260
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	114, 188
MboI	GATC	2 cut(s)	112, 186
MflI	RGATCY	1 cut(s)	186
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	22, 29, 137, 177, 214, 261, 263
MseI	TTAA	2 cut(s)	66, 156
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	79, 84
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	112, 186
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	6, 245
NspI	RCATGY	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	123, 178
PkrI	GCNGC	1 cut(s)	52
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PspN4I	GGNNCC	2 cut(s)	6, 245
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	199
SaqAI	TTAA	2 cut(s)	66, 156
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	112, 186
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	5 cut(s)	98, 138, 201, 234, 255
SfcI	CTRYAG	2 cut(s)	108, 168
SmlI	CTYRAG	2 cut(s)	128, 254
SmoI	CTYRAG	2 cut(s)	128, 254
SsiI	CCGC	2 cut(s)	51, 82
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	234
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	123, 178
Tru1I	TTAA	2 cut(s)	66, 156
Tru9I	TTAA	2 cut(s)	66, 156
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.