Rroxscaffold_2G00084440

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000483
Physical Location & Seq
Forward (+)
6934622 .. 6935393
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084440.1

Sequence Viewer

Length: 576 bp
ATGGAACCACGAACTCGCAACTATTGGAGCTTCAAACCCAACAACAAACGGAATTTCAAGCCCGACGAACCAACCGAGGAGGGAGGAAGCAACCAAGCAGCGGAAGTAGGTTTTAAGCGTCCAACTCCGCAGCAGATTCAAGAGATCGGCCTCAATACGGCGGTTTGGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAATCTCGGGAGAGCCGGCGGTGAAGGCATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCACAAGTTCTACGGATGAAGGTGGATCCATTGATACGAACTTTGGTTCCACCGATCCTACAACAACAGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCACATGAGGACATCCTTGGTAACCCGATGACTACTTCCGAGGAAGGTAGCGCATACGGTTACCATTCGGTGGCTCGGGCAGTTACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATCCGGAGCCGCCGACTTGGCTTAGTATAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.9

Weight (kDa)

4.72

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 484
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 5 cut(s) 101, 128, 161, 230, 551
AclI AACGTT 1 cut(s) 249
AclWI GGATC 4 cut(s) 271, 306, 319, 335
AcsI RAATTY 1 cut(s) 52
AfiI CCNNNNNNNGG 3 cut(s) 100, 157, 484
AgsI TTSAA 3 cut(s) 34, 58, 140
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 30, 528
AluI AGCT 2 cut(s) 30, 528
Alw21I GWGCWC 2 cut(s) 418, 530
Alw26I GTCTC 1 cut(s) 522
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 4 cut(s) 271, 306, 319, 335
Ama87I CYCGRG 2 cut(s) 217, 489
Aor13HI TCCGGA 1 cut(s) 544
AoxI GGCC 3 cut(s) 148, 168, 531
ApaLI GTGCAC 1 cut(s) 414
ApeKI GCWGC 2 cut(s) 98, 130
ApoI RAATTY 1 cut(s) 52
Asp700I GAANNNNTTC 2 cut(s) 189, 396
AspLEI GCGC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 168, 284
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 2 cut(s) 217, 489
AvaII GGWCC 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 418
BamHI GGATCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 418, 530
BbvI GCAGC 2 cut(s) 110, 142
BccI CCATC 1 cut(s) 549
BceAI ACGGC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 522
BglI GCCNNNNNGGC 1 cut(s) 559
BisI GCNGC 3 cut(s) 99, 131, 551
BlsI GCNGC 3 cut(s) 100, 132, 552
Bme18I GGWCC 1 cut(s) 284
BmeT110I CYCGRG 2 cut(s) 217, 489
BmgT120I GGNCC 2 cut(s) 168, 284
BmiI GGNNCC 6 cut(s) 6, 201, 286, 313, 334, 549
BpiI GAAGAC 1 cut(s) 182
BpuEI CTTGAG 2 cut(s) 497, 544
BsaJI CCNNGG 4 cut(s) 75, 368, 430, 453
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 157, 484
Bse118I RCCGGY 1 cut(s) 226
BseAI TCCGGA 1 cut(s) 544
BseDI CCNNGG 4 cut(s) 75, 368, 430, 453
BseGI GGATG 3 cut(s) 307, 426, 541
BseLI CCNNNNNNNGG 3 cut(s) 100, 157, 484
BseRI GAGGAG 3 cut(s) 92, 395, 398
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 2 cut(s) 110, 142
Bsh1285I CGRYCG 1 cut(s) 175
BshFI GGCC 3 cut(s) 150, 170, 533
BsiEI CGRYCG 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 418, 530
BsiHKCI CYCGRG 2 cut(s) 217, 489
BsiSI CCGG 2 cut(s) 227, 545
BslI CCNNNNNNNGG 3 cut(s) 100, 157, 484
BsmAI GTCTC 1 cut(s) 522
BsnI GGCC 3 cut(s) 150, 170, 533
BsoBI CYCGRG 2 cut(s) 217, 489
Bsp1286I GDGCHC 2 cut(s) 418, 530
Bsp13I TCCGGA 1 cut(s) 544
Bsp143I GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
Bsp19I CCATGG 1 cut(s) 368
BspACI CCGC 5 cut(s) 101, 128, 161, 230, 551
BspANI GGCC 3 cut(s) 150, 170, 533
BspEI TCCGGA 1 cut(s) 544
BspLI GGNNCC 6 cut(s) 6, 201, 286, 313, 334, 549
BspPI GGATC 4 cut(s) 271, 306, 319, 335
BsrFI RCCGGY 1 cut(s) 226
BssAI RCCGGY 1 cut(s) 226
BssECI CCNNGG 4 cut(s) 75, 368, 430, 453
BssMI GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
BssT1I CCWWGG 2 cut(s) 368, 430
Bst4CI ACNGT 2 cut(s) 473, 505
Bst6I CTCTTC 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 563
BstDSI CCRYGG 1 cut(s) 368
BstEII GGTNACC 2 cut(s) 434, 473
BstF5I GGATG 3 cut(s) 307, 426, 541
BstHHI GCGC 1 cut(s) 467
BstKTI GATC 7 cut(s) 147, 175, 266, 274, 314, 343, 390
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
BstMCI CGRYCG 1 cut(s) 175
BstMWI GCNNNNNNNGC 3 cut(s) 167, 236, 559
BstPI GGTNACC 2 cut(s) 434, 473
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 110, 142
BstV2I GAAGAC 1 cut(s) 182
BstX2I RGATCY 2 cut(s) 263, 311
BstYI RGATCY 2 cut(s) 263, 311
BsuRI GGCC 3 cut(s) 150, 170, 533
BtgI CCRYGG 1 cut(s) 368
BtsCI GGATG 3 cut(s) 307, 426, 541
Cac8I GCNNGC 1 cut(s) 228
CfoI GCGC 1 cut(s) 467
Cfr10I RCCGGY 1 cut(s) 226
Cfr13I GGNCC 2 cut(s) 168, 284
CseI GACGC 1 cut(s) 107
CviAII CATG 2 cut(s) 369, 419
DdeI CTNAG 1 cut(s) 563
DpnI GATC 7 cut(s) 146, 174, 265, 273, 313, 342, 389
DpnII GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
DrdI GACNNNNNNGTC 1 cut(s) 186
DseDI GACNNNNNNGTC 1 cut(s) 186
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
Ecl136II GAGCTC 1 cut(s) 528
Eco130I CCWWGG 2 cut(s) 368, 430
Eco24I GRGCYC 1 cut(s) 530
Eco47I GGWCC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 528
Eco88I CYCGRG 2 cut(s) 217, 489
Eco91I GGTNACC 2 cut(s) 434, 473
EcoICRI GAGCTC 1 cut(s) 528
EcoO65I GGTNACC 2 cut(s) 434, 473
EcoT14I CCWWGG 2 cut(s) 368, 430
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 2 cut(s) 368, 430
FaeI CATG 2 cut(s) 372, 422
FaiI YATR 4 cut(s) 370, 420, 469, 569
FalI AAGNNNNNCTT 4 cut(s) 174, 206, 506, 538
FatI CATG 2 cut(s) 368, 418
Fnu4HI GCNGC 3 cut(s) 99, 131, 551
FokI GGATG 3 cut(s) 314, 413, 528
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 3 cut(s) 99, 131, 551
GlaI GCGC 1 cut(s) 466
GluI GCNGC 3 cut(s) 99, 131, 551
HaeIII GGCC 3 cut(s) 150, 170, 533
HapII CCGG 2 cut(s) 227, 545
HgaI GACGC 1 cut(s) 107
HhaI GCGC 1 cut(s) 467
Hin1II CATG 2 cut(s) 372, 422
Hin6I GCGC 1 cut(s) 465
HinP1I GCGC 1 cut(s) 465
HinfI GANTC 1 cut(s) 136
HpaII CCGG 2 cut(s) 227, 545
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 246, 454
Hpy188III TCNNGA 6 cut(s) 140, 203, 219, 269, 523, 545
Hpy8I GTNNAC 1 cut(s) 416
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 229, 299, 374, 452
HpyCH4III ACNGT 2 cut(s) 473, 505
HpyCH4IV ACGT 2 cut(s) 187, 249
HpyCH4V TGCA 1 cut(s) 416
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 236, 559
HpyF3I CTNAG 1 cut(s) 563
HpySE526I ACGT 2 cut(s) 187, 249
Hsp92II CATG 2 cut(s) 372, 422
HspAI GCGC 1 cut(s) 465
Kpn2I TCCGGA 1 cut(s) 544
KroI GCCGGC 1 cut(s) 226
KroNI GCCGGC 1 cut(s) 228
Kzo9I GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
LmnI GCTCC 2 cut(s) 27, 547
LpnPI CCDG 3 cut(s) 216, 240, 558
Lsp1109I GCAGC 2 cut(s) 110, 142
MaeII ACGT 2 cut(s) 187, 249
MaeIII GTNAC 3 cut(s) 434, 473, 496
MalI GATC 7 cut(s) 146, 174, 265, 273, 313, 342, 389
MboI GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
MboII GAAGA 2 cut(s) 182, 389
MflI RGATCY 2 cut(s) 263, 311
MhlI GDGCHC 2 cut(s) 418, 530
MluCI AATT 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 146
MroI TCCGGA 1 cut(s) 544
MroNI GCCGGC 1 cut(s) 226
MroXI GAANNNNTTC 2 cut(s) 189, 396
MseI TTAA 1 cut(s) 114
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 227, 545
MwoI GCNNNNNNNGC 3 cut(s) 167, 236, 559
NaeI GCCGGC 1 cut(s) 228
NcoI CCATGG 1 cut(s) 368
NdeII GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
NgoMIV GCCGGC 1 cut(s) 226
NlaIII CATG 2 cut(s) 372, 422
NlaIV GGNNCC 6 cut(s) 6, 201, 286, 313, 334, 549
NmeAIII GCCGAG 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 228
PdmI GAANNNNTTC 2 cut(s) 189, 396
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 484
PkrI GCNGC 3 cut(s) 100, 132, 552
Ple19I CGATCG 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 530
Psp1406I AACGTT 1 cut(s) 249
PspEI GGTNACC 2 cut(s) 434, 473
PspN4I GGNNCC 6 cut(s) 6, 201, 286, 313, 334, 549
PspPI GGNCC 2 cut(s) 168, 284
PsuI RGATCY 2 cut(s) 263, 311
PvuI CGATCG 1 cut(s) 175
SacI GAGCTC 1 cut(s) 530
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 3 cut(s) 99, 131, 551
Sau3AI GATC 7 cut(s) 144, 172, 263, 271, 311, 340, 387
Sau96I GGNCC 2 cut(s) 168, 284
SduI GDGCHC 2 cut(s) 418, 530
SetI ASST 9 cut(s) 32, 112, 190, 211, 252, 310, 366, 463, 530
SinI GGWCC 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 512, 523
SmoI CTYRAG 2 cut(s) 512, 523
Sse9I AATT 1 cut(s) 52
SsiI CCGC 5 cut(s) 101, 128, 161, 230, 551
SstI GAGCTC 1 cut(s) 530
StyI CCWWGG 2 cut(s) 368, 430
TaaI ACNGT 2 cut(s) 473, 505
TaiI ACGT 2 cut(s) 190, 252
TaqI TCGA 3 cut(s) 175, 270, 390
TasI AATT 1 cut(s) 52
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseI GCWGC 2 cut(s) 98, 130
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 2 cut(s) 64, 314
Van91I CCANNNNNTGG 1 cut(s) 484
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 284
XapI RAATTY 1 cut(s) 52
XmnI GAANNNNTTC 2 cut(s) 189, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.