Homeodomain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 257 |
| AatII | GACGTC | 1 cut(s) | 618 |
| Acc65I | GGTACC | 1 cut(s) | 185 |
| AccB1I | GGYRCC | 1 cut(s) | 185 |
| AciI | CCGC | 1 cut(s) | 357 |
| AclI | AACGTT | 1 cut(s) | 318 |
| AclWI | GGATC | 6 cut(s) | 185, 340, 348, 361, 375, 457 |
| AcoI | YGGCCR | 1 cut(s) | 460 |
| AcyI | GRCGYC | 1 cut(s) | 615 |
| AfaI | GTAC | 2 cut(s) | 187, 510 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 120, 605 |
| AgeI | ACCGGT | 1 cut(s) | 120 |
| AgsI | TTSAA | 3 cut(s) | 209, 442, 496 |
| AjnI | CCWGG | 1 cut(s) | 569 |
| Alw21I | GWGCWC | 1 cut(s) | 606 |
| Alw26I | GTCTC | 1 cut(s) | 224 |
| Alw44I | GTGCAC | 1 cut(s) | 602 |
| AlwI | GGATC | 6 cut(s) | 185, 340, 348, 361, 375, 457 |
| Ama87I | CYCGRG | 1 cut(s) | 287 |
| AoxI | GGCC | 1 cut(s) | 460 |
| ApaLI | GTGCAC | 1 cut(s) | 602 |
| ApeKI | GCWGC | 1 cut(s) | 77 |
| AsiGI | ACCGGT | 1 cut(s) | 120 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 260, 584 |
| Asp718I | GGTACC | 1 cut(s) | 185 |
| AspLEI | GCGC | 1 cut(s) | 655 |
| AspS9I | GGNCC | 2 cut(s) | 111, 429 |
| AsuC2I | CCSGG | 1 cut(s) | 82 |
| AsuHPI | GGTGA | 3 cut(s) | 480, 559, 620 |
| AsuII | TTCGAA | 1 cut(s) | 314 |
| AvaI | CYCGRG | 1 cut(s) | 287 |
| AvaII | GGWCC | 2 cut(s) | 111, 429 |
| BaeGI | GKGCMC | 1 cut(s) | 606 |
| BamHI | GGATCC | 1 cut(s) | 353 |
| BanI | GGYRCC | 1 cut(s) | 185 |
| BbsI | GAAGAC | 2 cut(s) | 253, 637 |
| Bbv12I | GWGCWC | 1 cut(s) | 606 |
| BbvI | GCAGC | 1 cut(s) | 89 |
| BccI | CCATC | 1 cut(s) | 419 |
| BciT130I | CCWGG | 1 cut(s) | 571 |
| BcnI | CCSGG | 1 cut(s) | 82 |
| BcoDI | GTCTC | 1 cut(s) | 224 |
| BfaI | CTAG | 1 cut(s) | 360 |
| BfmI | CTRYAG | 1 cut(s) | 414 |
| BglII | AGATCT | 1 cut(s) | 213 |
| BisI | GCNGC | 1 cut(s) | 78 |
| BlsI | GCNGC | 1 cut(s) | 79 |
| Bme1390I | CCNGG | 2 cut(s) | 82, 571 |
| Bme18I | GGWCC | 2 cut(s) | 111, 429 |
| BmeT110I | CYCGRG | 1 cut(s) | 287 |
| BmgT120I | GGNCC | 2 cut(s) | 111, 429 |
| BmiI | GGNNCC | 5 cut(s) | 187, 272, 355, 403, 430 |
| BmrFI | CCNGG | 2 cut(s) | 82, 571 |
| BpiI | GAAGAC | 2 cut(s) | 253, 637 |
| Bpu14I | TTCGAA | 1 cut(s) | 314 |
| BpuEI | CTTGAG | 2 cut(s) | 139, 685 |
| BpuMI | CCSGG | 1 cut(s) | 82 |
| BsaHI | GRCGYC | 1 cut(s) | 615 |
| BsaJI | CCNNGG | 3 cut(s) | 54, 619, 641 |
| BsaWI | WCCGGW | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 120, 605 |
| Bse118I | RCCGGY | 1 cut(s) | 120 |
| BseBI | CCWGG | 1 cut(s) | 571 |
| BseDI | CCNNGG | 3 cut(s) | 54, 619, 641 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 120, 605 |
| BseRI | GAGGAG | 3 cut(s) | 71, 475, 575 |
| BseSI | GKGCMC | 1 cut(s) | 606 |
| BseXI | GCAGC | 1 cut(s) | 89 |
| BshFI | GGCC | 1 cut(s) | 462 |
| BshNI | GGYRCC | 1 cut(s) | 185 |
| BshTI | ACCGGT | 1 cut(s) | 120 |
| BsiHKAI | GWGCWC | 1 cut(s) | 606 |
| BsiHKCI | CYCGRG | 1 cut(s) | 287 |
| BsiSI | CCGG | 2 cut(s) | 81, 121 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 120, 605 |
| BsmAI | GTCTC | 1 cut(s) | 224 |
| BsnI | GGCC | 1 cut(s) | 462 |
| BsoBI | CYCGRG | 1 cut(s) | 287 |
| Bsp119I | TTCGAA | 1 cut(s) | 314 |
| Bsp1286I | GDGCHC | 1 cut(s) | 606 |
| BspACI | CCGC | 1 cut(s) | 357 |
| BspANI | GGCC | 1 cut(s) | 462 |
| BspLI | GGNNCC | 5 cut(s) | 187, 272, 355, 403, 430 |
| BspPI | GGATC | 6 cut(s) | 185, 340, 348, 361, 375, 457 |
| BspT104I | TTCGAA | 1 cut(s) | 314 |
| BspT107I | GGYRCC | 1 cut(s) | 185 |
| BsrFI | RCCGGY | 1 cut(s) | 120 |
| BssAI | RCCGGY | 1 cut(s) | 120 |
| BssECI | CCNNGG | 3 cut(s) | 54, 619, 641 |
| BssNI | GRCGYC | 1 cut(s) | 615 |
| BssT1I | CCWWGG | 1 cut(s) | 619 |
| Bst2UI | CCWGG | 1 cut(s) | 571 |
| Bst4CI | ACNGT | 4 cut(s) | 234, 508, 608, 693 |
| Bst6I | CTCTTC | 1 cut(s) | 590 |
| BstACI | GRCGYC | 1 cut(s) | 615 |
| BstBI | TTCGAA | 1 cut(s) | 314 |
| BstDEI | CTNAG | 1 cut(s) | 181 |
| BstEII | GGTNACC | 1 cut(s) | 623 |
| BstHHI | GCGC | 1 cut(s) | 655 |
| BstMAI | GTCTC | 1 cut(s) | 224 |
| BstNI | CCWGG | 1 cut(s) | 571 |
| BstPI | GGTNACC | 1 cut(s) | 623 |
| BstSCI | CCNGG | 2 cut(s) | 80, 569 |
| BstSFI | CTRYAG | 1 cut(s) | 414 |
| BstSLI | GKGCMC | 1 cut(s) | 606 |
| BstV1I | GCAGC | 1 cut(s) | 89 |
| BstV2I | GAAGAC | 2 cut(s) | 253, 637 |
| BstX2I | RGATCY | 5 cut(s) | 177, 213, 332, 353, 380 |
| BstYI | RGATCY | 5 cut(s) | 177, 213, 332, 353, 380 |
| BsuRI | GGCC | 1 cut(s) | 462 |
| BtsIMutI | CAGTG | 1 cut(s) | 698 |
| CfoI | GCGC | 1 cut(s) | 655 |
| Cfr10I | RCCGGY | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 2 cut(s) | 111, 429 |
| Csp6I | GTAC | 2 cut(s) | 186, 509 |
| CspAI | ACCGGT | 1 cut(s) | 120 |
| CviAII | CATG | 2 cut(s) | 453, 546 |
| CviJI | RGCY | 4 cut(s) | 40, 80, 462, 697 |
| CviKI_1 | RGCY | 4 cut(s) | 40, 80, 462, 697 |
| CviQI | GTAC | 2 cut(s) | 186, 509 |
| DdeI | CTNAG | 1 cut(s) | 181 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 257 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 257 |
| EaeI | YGGCCR | 1 cut(s) | 460 |
| Eam1104I | CTCTTC | 1 cut(s) | 590 |
| EarI | CTCTTC | 1 cut(s) | 590 |
| Eco130I | CCWWGG | 1 cut(s) | 619 |
| Eco47I | GGWCC | 2 cut(s) | 111, 429 |
| Eco88I | CYCGRG | 1 cut(s) | 287 |
| Eco91I | GGTNACC | 1 cut(s) | 623 |
| EcoO65I | GGTNACC | 1 cut(s) | 623 |
| EcoRII | CCWGG | 1 cut(s) | 569 |
| EcoT14I | CCWWGG | 1 cut(s) | 619 |
| ErhI | CCWWGG | 1 cut(s) | 619 |
| FaeI | CATG | 2 cut(s) | 456, 549 |
| FaiI | YATR | 9 cut(s) | 147, 237, 416, 454, 465, 478, 547, 657, 659 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 245, 277, 694 |
| FatI | CATG | 2 cut(s) | 452, 545 |
| FauNDI | CATATG | 1 cut(s) | 657 |
| Fnu4HI | GCNGC | 1 cut(s) | 78 |
| Fsp4HI | GCNGC | 1 cut(s) | 78 |
| FspBI | CTAG | 1 cut(s) | 360 |
| GlaI | GCGC | 1 cut(s) | 654 |
| GluI | GCNGC | 1 cut(s) | 78 |
| HaeIII | GGCC | 1 cut(s) | 462 |
| HapII | CCGG | 2 cut(s) | 81, 121 |
| HhaI | GCGC | 1 cut(s) | 655 |
| Hin1I | GRCGYC | 1 cut(s) | 615 |
| Hin1II | CATG | 2 cut(s) | 456, 549 |
| Hin6I | GCGC | 1 cut(s) | 653 |
| HinP1I | GCGC | 1 cut(s) | 653 |
| HincII | GTYRAC | 1 cut(s) | 472 |
| HindII | GTYRAC | 1 cut(s) | 472 |
| HinfI | GANTC | 3 cut(s) | 127, 149, 410 |
| HpaII | CCGG | 2 cut(s) | 81, 121 |
| HphI | GGTGA | 3 cut(s) | 480, 559, 620 |
| Hpy166II | GTNNAC | 3 cut(s) | 126, 472, 604 |
| Hpy188I | TCNGA | 4 cut(s) | 197, 228, 275, 642 |
| Hpy188III | TCNNGA | 6 cut(s) | 209, 287, 289, 338, 422, 711 |
| Hpy8I | GTNNAC | 3 cut(s) | 126, 472, 604 |
| Hpy99I | CGWCG | 1 cut(s) | 437 |
| HpyAV | CCTTC | 3 cut(s) | 299, 368, 640 |
| HpyCH4III | ACNGT | 4 cut(s) | 234, 508, 608, 693 |
| HpyCH4IV | ACGT | 3 cut(s) | 258, 318, 615 |
| HpyCH4V | TGCA | 1 cut(s) | 604 |
| HpyF3I | CTNAG | 1 cut(s) | 181 |
| HpySE526I | ACGT | 3 cut(s) | 258, 318, 615 |
| Hsp92I | GRCGYC | 1 cut(s) | 615 |
| Hsp92II | CATG | 2 cut(s) | 456, 549 |
| HspAI | GCGC | 1 cut(s) | 653 |
| KpnI | GGTACC | 1 cut(s) | 189 |
| LpnPI | CCDG | 4 cut(s) | 94, 134, 556, 583 |
| Lsp1109I | GCAGC | 1 cut(s) | 89 |
| MaeI | CTAG | 1 cut(s) | 360 |
| MaeII | ACGT | 3 cut(s) | 258, 318, 615 |
| MaeIII | GTNAC | 4 cut(s) | 6, 623, 661, 684 |
| MboII | GAAGA | 4 cut(s) | 253, 311, 577, 642 |
| MflI | RGATCY | 5 cut(s) | 177, 213, 332, 353, 380 |
| MhlI | GDGCHC | 1 cut(s) | 606 |
| MluCI | AATT | 2 cut(s) | 310, 442 |
| MlyI | GAGTC | 1 cut(s) | 121 |
| MroXI | GAANNNNTTC | 2 cut(s) | 260, 584 |
| MspI | CCGG | 2 cut(s) | 81, 121 |
| MspR9I | CCNGG | 2 cut(s) | 82, 571 |
| MvaI | CCWGG | 1 cut(s) | 571 |
| NciI | CCSGG | 1 cut(s) | 82 |
| NdeI | CATATG | 1 cut(s) | 657 |
| NlaIII | CATG | 2 cut(s) | 456, 549 |
| NlaIV | GGNNCC | 5 cut(s) | 187, 272, 355, 403, 430 |
| NspV | TTCGAA | 1 cut(s) | 314 |
| PaeR7I | CTCGAG | 1 cut(s) | 287 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 294, 612 |
| PdmI | GAANNNNTTC | 2 cut(s) | 260, 584 |
| PfeI | GAWTC | 2 cut(s) | 149, 410 |
| PinAI | ACCGGT | 1 cut(s) | 120 |
| PkrI | GCNGC | 1 cut(s) | 79 |
| PleI | GAGTC | 1 cut(s) | 121 |
| PpsI | GAGTC | 1 cut(s) | 121 |
| Psp1406I | AACGTT | 1 cut(s) | 318 |
| Psp6I | CCWGG | 1 cut(s) | 569 |
| PspEI | GGTNACC | 1 cut(s) | 623 |
| PspGI | CCWGG | 1 cut(s) | 569 |
| PspN4I | GGNNCC | 5 cut(s) | 187, 272, 355, 403, 430 |
| PspPI | GGNCC | 2 cut(s) | 111, 429 |
| PsuI | RGATCY | 5 cut(s) | 177, 213, 332, 353, 380 |
| RsaI | GTAC | 2 cut(s) | 187, 510 |
| RsaNI | GTAC | 2 cut(s) | 186, 509 |
| SatI | GCNGC | 1 cut(s) | 78 |
| Sau96I | GGNCC | 2 cut(s) | 111, 429 |
| SchI | GAGTC | 1 cut(s) | 121 |
| ScrFI | CCNGG | 2 cut(s) | 82, 571 |
| SduI | GDGCHC | 1 cut(s) | 606 |
| SfcI | CTRYAG | 1 cut(s) | 414 |
| Sfr274I | CTCGAG | 1 cut(s) | 287 |
| SfuI | TTCGAA | 1 cut(s) | 314 |
| SinI | GGWCC | 2 cut(s) | 111, 429 |
| SlaI | CTCGAG | 1 cut(s) | 287 |
| SmlI | CTYRAG | 3 cut(s) | 154, 287, 700 |
| SmoI | CTYRAG | 3 cut(s) | 154, 287, 700 |
| Sse9I | AATT | 2 cut(s) | 310, 442 |
| SsiI | CCGC | 1 cut(s) | 357 |
| SspMI | CTAG | 1 cut(s) | 360 |
| StyD4I | CCNGG | 2 cut(s) | 80, 569 |
| StyI | CCWWGG | 1 cut(s) | 619 |
| TaaI | ACNGT | 4 cut(s) | 234, 508, 608, 693 |
| TaiI | ACGT | 3 cut(s) | 261, 321, 618 |
| TaqI | TCGA | 5 cut(s) | 288, 314, 339, 435, 578 |
| TasI | AATT | 2 cut(s) | 310, 442 |
| TfiI | GAWTC | 2 cut(s) | 149, 410 |
| TscAI | CASTG | 1 cut(s) | 698 |
| TseI | GCWGC | 1 cut(s) | 77 |
| TspDTI | ATGAA | 4 cut(s) | 162, 318, 387, 534 |
| TspGWI | ACGGA | 2 cut(s) | 124, 421 |
| TspRI | CASTG | 1 cut(s) | 698 |
| VneI | GTGCAC | 1 cut(s) | 602 |
| VpaK11BI | GGWCC | 2 cut(s) | 111, 429 |
| XhoI | CTCGAG | 1 cut(s) | 287 |
| XmnI | GAANNNNTTC | 2 cut(s) | 260, 584 |
| XspI | CTAG | 1 cut(s) | 360 |
| ZraI | GACGTC | 1 cut(s) | 616 |