Rroxscaffold_3G00239230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000483
Physical Location & Seq
Forward (+)
29102966 .. 29103484
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239230.1

Sequence Viewer

Length: 519 bp
ATGGGCAGATTGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAGAGCGAGAAGATGAAGGCAATTCGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGATCCGCTAGTTCTACCGATAAAGGTGGATCCATTGATCTAAACTTTGGTTCCACTAGTTCTACGGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTTGGCCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCGGTACTACTTCCTTCGGCACAACGGAGGACAACCTTTTATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCACGGTGAGGACGTCCTTGGTAACCCGAAGAGTACTTCCGAGAAAGGTAGCGCATACGGTTACTATTCGGTGGCTCGGCGATTACAACGGTGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATTCGGAGCCACCGACTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.48

Weight (kDa)

10.64

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AatII GACGTC 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 184
AciI CCGC 1 cut(s) 123
AclI AACGTT 1 cut(s) 84
AclWI GGATC 8 cut(s) 106, 114, 127, 141, 154, 188, 201, 222
AcoI YGGCCR 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 2 cut(s) 276, 402
AfiI CCNNNNNNNGG 1 cut(s) 370
AgeI ACCGGT 1 cut(s) 271
AgsI TTSAA 2 cut(s) 207, 261
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 2 cut(s) 481, 515
AluI AGCT 2 cut(s) 481, 515
Alw21I GWGCWC 2 cut(s) 371, 483
Alw26I GTCTC 1 cut(s) 475
Alw44I GTGCAC 1 cut(s) 367
AlwI GGATC 8 cut(s) 106, 114, 127, 141, 154, 188, 201, 222
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 2 cut(s) 225, 484
ApaLI GTGCAC 1 cut(s) 367
AsiGI ACCGGT 1 cut(s) 271
Asp700I GAANNNNTTC 2 cut(s) 25, 349
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 2 cut(s) 245, 385
AsuII TTCGAA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 371
BalI TGGCCA 1 cut(s) 227
BamHI GGATCC 3 cut(s) 119, 146, 193
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 371, 483
BccI CCATC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 475
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 126, 174
BmcAI AGTACT 1 cut(s) 402
BmeT110I CYCGRG 1 cut(s) 52
BmiI GGNNCC 7 cut(s) 37, 121, 148, 169, 186, 195, 502
BpiI GAAGAC 1 cut(s) 18
Bpu14I TTCGAA 1 cut(s) 80
BpuEI CTTGAG 2 cut(s) 450, 497
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 384
BsaWI WCCGGW 1 cut(s) 271
Bsc4I CCNNNNNNNGG 1 cut(s) 370
Bse118I RCCGGY 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 370
BseRI GAGGAG 3 cut(s) 240, 337, 340
BseSI GKGCMC 1 cut(s) 371
BshFI GGCC 2 cut(s) 227, 486
BshNI GGYRCC 1 cut(s) 184
BshTI ACCGGT 1 cut(s) 271
BsiHKAI GWGCWC 2 cut(s) 371, 483
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 1 cut(s) 370
BsmAI GTCTC 1 cut(s) 475
BsnI GGCC 2 cut(s) 227, 486
BsoBI CYCGRG 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 2 cut(s) 371, 483
Bsp143I GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
BspACI CCGC 1 cut(s) 123
BspANI GGCC 2 cut(s) 227, 486
BspLI GGNNCC 7 cut(s) 37, 121, 148, 169, 186, 195, 502
BspPI GGATC 8 cut(s) 106, 114, 127, 141, 154, 188, 201, 222
BspT104I TTCGAA 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 184
BsrFI RCCGGY 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 384
Bst4CI ACNGT 4 cut(s) 184, 373, 427, 458
Bst6I CTCTTC 2 cut(s) 355, 391
BstACI GRCGYC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 511, 516
BstEII GGTNACC 1 cut(s) 388
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 9 cut(s) 101, 109, 122, 149, 157, 196, 217, 332, 343
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
BstPI GGTNACC 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 371
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 4 cut(s) 98, 119, 146, 193
BstYI RGATCY 4 cut(s) 98, 119, 146, 193
BsuRI GGCC 2 cut(s) 227, 486
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 271
Csp6I GTAC 2 cut(s) 275, 401
CspAI ACCGGT 1 cut(s) 271
CviAII CATG 1 cut(s) 218
CviJI RGCY 7 cut(s) 227, 442, 462, 481, 486, 503, 515
CviKI_1 RGCY 7 cut(s) 227, 442, 462, 481, 486, 503, 515
CviQI GTAC 2 cut(s) 275, 401
DdeI CTNAG 2 cut(s) 511, 516
DpnI GATC 9 cut(s) 100, 108, 121, 148, 156, 195, 216, 331, 342
DpnII GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 2 cut(s) 355, 391
EarI CTCTTC 2 cut(s) 355, 391
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 388
EcoICRI GAGCTC 1 cut(s) 481
EcoO65I GGTNACC 1 cut(s) 388
EcoT14I CCWWGG 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 221
FaiI YATR 5 cut(s) 219, 230, 243, 312, 423
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 459, 491
FatI CATG 1 cut(s) 217
FriOI GRGCYC 1 cut(s) 483
FspBI CTAG 2 cut(s) 126, 174
GlaI GCGC 1 cut(s) 420
HaeIII GGCC 2 cut(s) 227, 486
HapII CCGG 1 cut(s) 272
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 1 cut(s) 221
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HpaII CCGG 1 cut(s) 272
HphI GGTGA 2 cut(s) 245, 385
Hpy166II GTNNAC 2 cut(s) 237, 369
Hpy188I TCNGA 3 cut(s) 40, 408, 500
Hpy188III TCNNGA 4 cut(s) 52, 54, 104, 476
Hpy8I GTNNAC 2 cut(s) 237, 369
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 65, 294
HpyCH4III ACNGT 4 cut(s) 184, 373, 427, 458
HpyCH4IV ACGT 3 cut(s) 23, 84, 380
HpyCH4V TGCA 1 cut(s) 369
HpyF3I CTNAG 2 cut(s) 511, 516
HpySE526I ACGT 3 cut(s) 23, 84, 380
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 1 cut(s) 221
HspAI GCGC 1 cut(s) 419
Kzo9I GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
LmnI GCTCC 1 cut(s) 500
LpnPI CCDG 2 cut(s) 285, 321
MaeI CTAG 2 cut(s) 126, 174
MaeII ACGT 3 cut(s) 23, 84, 380
MaeIII GTNAC 2 cut(s) 388, 427
MalI GATC 9 cut(s) 100, 108, 121, 148, 156, 195, 216, 331, 342
MboI GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
MboII GAAGA 4 cut(s) 18, 77, 342, 408
MflI RGATCY 4 cut(s) 98, 119, 146, 193
MhlI GDGCHC 2 cut(s) 371, 483
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 2 cut(s) 76, 207
MluNI TGGCCA 1 cut(s) 227
Mox20I TGGCCA 1 cut(s) 227
MroXI GAANNNNTTC 2 cut(s) 25, 349
MscI TGGCCA 1 cut(s) 227
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 1 cut(s) 272
NdeII GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 7 cut(s) 37, 121, 148, 169, 186, 195, 502
NmeAIII GCCGAG 2 cut(s) 423, 462
NspV TTCGAA 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 2 cut(s) 377, 504
PdmI GAANNNNTTC 2 cut(s) 25, 349
PinAI ACCGGT 1 cut(s) 271
Psp124BI GAGCTC 1 cut(s) 483
Psp1406I AACGTT 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 388
PspN4I GGNNCC 7 cut(s) 37, 121, 148, 169, 186, 195, 502
PsuI RGATCY 4 cut(s) 98, 119, 146, 193
RsaI GTAC 2 cut(s) 276, 402
RsaNI GTAC 2 cut(s) 275, 401
SacI GAGCTC 1 cut(s) 483
Sau3AI GATC 9 cut(s) 98, 106, 119, 146, 154, 193, 214, 329, 340
ScaI AGTACT 1 cut(s) 402
SduI GDGCHC 2 cut(s) 371, 483
Sfr274I CTCGAG 1 cut(s) 52
SfuI TTCGAA 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 52
SmlI CTYRAG 3 cut(s) 52, 465, 476
SmoI CTYRAG 3 cut(s) 52, 465, 476
SpeI ACTAGT 1 cut(s) 173
Sse9I AATT 2 cut(s) 76, 207
SsiI CCGC 1 cut(s) 123
SspMI CTAG 2 cut(s) 126, 174
SstI GAGCTC 1 cut(s) 483
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 4 cut(s) 184, 373, 427, 458
TaiI ACGT 3 cut(s) 26, 87, 383
TaqI TCGA 5 cut(s) 53, 80, 105, 200, 343
TasI AATT 2 cut(s) 76, 207
TatI WGTACW 1 cut(s) 400
TspDTI ATGAA 1 cut(s) 84
TspGWI ACGGA 2 cut(s) 186, 310
VneI GTGCAC 1 cut(s) 367
XhoI CTCGAG 1 cut(s) 52
XmnI GAANNNNTTC 2 cut(s) 25, 349
XspI CTAG 2 cut(s) 126, 174
ZraI GACGTC 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.