Rroxscaffold_2G00096210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000483
Physical Location & Seq
Reverse (-)
17459186 .. 17459620
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00096210.1

Sequence Viewer

Length: 435 bp
ATGGAACAACGAACCCTTCAACTATTGGAGCCTTCGACCCAACAACAAATGGAATTTCAAGCTCGAACCAACCGGGAAGAAGGAGGCAACCAAACAGCCGGAAGTAGTGCCAATCCGCCCCTCGGGCACCTAATACCCGGGGCTCCCACACCGCCACAACTAAGGATTCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCCACTCCCGAGCAGATTCAAGAGATCGGCCTCAATCGAAGCGGTTTGGGCCGATCGAAGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAATCCCGAGAGAGCCAACGAGATGAAGGCATTTCGGAAAGTCCGGGTTGGAGGATCTCTCGATCTCGACTTTGGACCTGCAAGTTGCGAGATGAGGGTGGATCCATTGCTGCGAACTTTGGTTCCACCGATCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.93

Weight (kDa)

9.99

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 271
Acc36I ACCTGC 1 cut(s) 382
AccB1I GGYRCC 1 cut(s) 126
AciI CCGC 3 cut(s) 116, 152, 246
AclWI GGATC 4 cut(s) 358, 392, 405, 421
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 3 cut(s) 20, 59, 224
AloI GAACNNNNNNTCC 4 cut(s) 283, 315, 403, 435
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 4 cut(s) 358, 392, 405, 421
Ama87I CYCGRG 4 cut(s) 122, 137, 212, 302
AoxI GGCC 3 cut(s) 175, 232, 253
ApeKI GCWGC 1 cut(s) 406
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 175, 253, 371
AsuC2I CCSGG 4 cut(s) 74, 138, 139, 341
AvaI CYCGRG 4 cut(s) 122, 137, 212, 302
AvaII GGWCC 1 cut(s) 371
BaeGI GKGCMC 1 cut(s) 129
BamHI GGATCC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 145
BbsI GAAGAC 2 cut(s) 267, 269
BbvI GCAGC 1 cut(s) 393
BcnI CCSGG 4 cut(s) 74, 138, 139, 341
BfuAI ACCTGC 1 cut(s) 382
BglI GCCNNNNNGGC 1 cut(s) 124
BisI GCNGC 1 cut(s) 407
BlsI GCNGC 1 cut(s) 408
Bme1390I CCNGG 4 cut(s) 74, 138, 139, 341
Bme18I GGWCC 1 cut(s) 371
BmeT110I CYCGRG 4 cut(s) 122, 137, 212, 302
BmgT120I GGNCC 3 cut(s) 175, 253, 371
BmiI GGNNCC 6 cut(s) 30, 128, 144, 286, 399, 420
BmrFI CCNGG 4 cut(s) 74, 138, 139, 341
BpiI GAAGAC 2 cut(s) 267, 269
BplI GAGNNNNNCTC 2 cut(s) 339, 371
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 4 cut(s) 74, 138, 139, 341
BsaJI CCNNGG 3 cut(s) 121, 137, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 401
BseDI CCNNGG 3 cut(s) 121, 137, 138
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 401
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 393
Bsh1285I CGRYCG 1 cut(s) 260
BshFI GGCC 3 cut(s) 177, 234, 255
BshNI GGYRCC 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 260
BsiHKCI CYCGRG 4 cut(s) 122, 137, 212, 302
BsiSI CCGG 4 cut(s) 73, 99, 138, 340
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 189
BsnI GGCC 3 cut(s) 177, 234, 255
BsoBI CYCGRG 4 cut(s) 122, 137, 212, 302
Bsp1286I GDGCHC 2 cut(s) 129, 145
Bsp143I GATC 6 cut(s) 228, 257, 350, 358, 397, 426
BspACI CCGC 3 cut(s) 116, 152, 246
BspANI GGCC 3 cut(s) 177, 234, 255
BspLI GGNNCC 6 cut(s) 30, 128, 144, 286, 399, 420
BspMI ACCTGC 1 cut(s) 382
BspPI GGATC 4 cut(s) 358, 392, 405, 421
BspT107I GGYRCC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 121, 137, 138
BssMI GATC 6 cut(s) 228, 257, 350, 358, 397, 426
BstDEI CTNAG 1 cut(s) 161
BstKTI GATC 6 cut(s) 231, 260, 353, 361, 400, 429
BstMBI GATC 6 cut(s) 228, 257, 350, 358, 397, 426
BstMCI CGRYCG 1 cut(s) 260
BstMWI GCNNNNNNNGC 2 cut(s) 124, 252
BstSCI CCNGG 4 cut(s) 72, 136, 137, 339
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 393
BstV2I GAAGAC 2 cut(s) 267, 269
BstX2I RGATCY 2 cut(s) 350, 397
BstYI RGATCY 2 cut(s) 350, 397
BsuRI GGCC 3 cut(s) 177, 234, 255
BveI ACCTGC 1 cut(s) 382
Cfr13I GGNCC 3 cut(s) 175, 253, 371
Cfr9I CCCGGG 1 cut(s) 137
CseI GACGC 1 cut(s) 191
CviJI RGCY 9 cut(s) 31, 62, 98, 143, 177, 195, 234, 255, 311
CviKI_1 RGCY 9 cut(s) 31, 62, 98, 143, 177, 195, 234, 255, 311
DdeI CTNAG 1 cut(s) 161
DpnI GATC 6 cut(s) 230, 259, 352, 360, 399, 428
DpnII GATC 6 cut(s) 228, 257, 350, 358, 397, 426
DrdI GACNNNNNNGTC 1 cut(s) 271
DseDI GACNNNNNNGTC 1 cut(s) 271
EciI GGCGGA 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 371
Eco88I CYCGRG 4 cut(s) 122, 137, 212, 302
EcoO109I RGGNCCY 1 cut(s) 175
EcoT38I GRGCYC 1 cut(s) 145
FaiI YATR 1 cut(s) 186
FalI AAGNNNNNCTT 2 cut(s) 259, 291
FaqI GGGAC 1 cut(s) 189
Fnu4HI GCNGC 1 cut(s) 407
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 407
GluI GCNGC 1 cut(s) 407
HaeIII GGCC 3 cut(s) 177, 234, 255
HapII CCGG 4 cut(s) 73, 99, 138, 340
HgaI GACGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 166, 220
HpaII CCGG 4 cut(s) 73, 99, 138, 340
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 6 cut(s) 212, 224, 288, 302, 356, 362
HpyAV CCTTC 4 cut(s) 26, 42, 74, 316
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 252
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 272
Kzo9I GATC 6 cut(s) 228, 257, 350, 358, 397, 426
LmnI GCTCC 2 cut(s) 28, 148
LpnPI CCDG 6 cut(s) 86, 112, 151, 301, 353, 387
Lsp1109I GCAGC 1 cut(s) 393
MaeII ACGT 1 cut(s) 272
MalI GATC 6 cut(s) 230, 259, 352, 360, 399, 428
MboI GATC 6 cut(s) 228, 257, 350, 358, 397, 426
MboII GAAGA 3 cut(s) 89, 267, 274
MflI RGATCY 2 cut(s) 350, 397
MhlI GDGCHC 2 cut(s) 129, 145
MluCI AATT 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 6 cut(s) 77, 131, 245, 304, 341, 384
MroXI GAANNNNTTC 1 cut(s) 274
MseI TTAA 1 cut(s) 198
MspI CCGG 4 cut(s) 73, 99, 138, 340
MspR9I CCNGG 4 cut(s) 74, 138, 139, 341
MwoI GCNNNNNNNGC 2 cut(s) 124, 252
NciI CCSGG 4 cut(s) 74, 138, 139, 341
NdeII GATC 6 cut(s) 228, 257, 350, 358, 397, 426
NlaIV GGNNCC 6 cut(s) 30, 128, 144, 286, 399, 420
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 2 cut(s) 166, 220
PkrI GCNGC 1 cut(s) 408
Ple19I CGATCG 1 cut(s) 260
PspN4I GGNNCC 6 cut(s) 30, 128, 144, 286, 399, 420
PspPI GGNCC 3 cut(s) 175, 253, 371
PsuI RGATCY 2 cut(s) 350, 397
PvuI CGATCG 1 cut(s) 260
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 1 cut(s) 407
Sau3AI GATC 6 cut(s) 228, 257, 350, 358, 397, 426
Sau96I GGNCC 3 cut(s) 175, 253, 371
ScrFI CCNGG 4 cut(s) 74, 138, 139, 341
SduI GDGCHC 2 cut(s) 129, 145
SetI ASST 5 cut(s) 64, 132, 275, 296, 376
SinI GGWCC 1 cut(s) 371
SmaI CCCGGG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 1 cut(s) 53
SsiI CCGC 3 cut(s) 116, 152, 246
StyD4I CCNGG 4 cut(s) 72, 136, 137, 339
TaiI ACGT 1 cut(s) 275
TaqI TCGA 6 cut(s) 35, 64, 241, 260, 357, 363
TasI AATT 1 cut(s) 53
TfiI GAWTC 2 cut(s) 166, 220
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TseI GCWGC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 335
TspMI CCCGGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 371
XapI RAATTY 1 cut(s) 53
XmaI CCCGGG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.