Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

52504086 .. 52504859

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00370850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAACAACGAACCCTTCAACTATTGGAGCCTTCACCCAACAACAAATGGAATTTCAAGCTCAAGAACCAACCGGGAAGAAGGAGGCAACCAAACAGCGGAAGTAGTGCCAATCCGCCCCTCGTGCAGCCTAATACCCGCCGGGCTCCCACACCGCCTCAACTAAGGATTCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCCACTCCCGAGCAGATTCAAGAGATCAGCCTCAATCGAAGCGTTTGGGCCGATCGAAGACAAGAACGTCTTCTTTTGGTTCCAGAACCTCAAATCCCGAGAGAGCCAACAGATGAAGGCATTTCGGAAAGTCCGGGTGCCGATAGATCCGTCGATCTATCTTTTGGGTCAAACGTCAACTATCATGTTGACCCAAATTCCACTTCACCTTTCAACAACAACAACAGTACTACCTCCTTCGACACAACAGGAGGTCAACTATCCATGGAACAAAGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCGATGACTACTTCCGGGGAAAGTAGCGCATACGGTTACCATCCAGGTGGCTCGGGCCGTTACAACAGTGGCTCTCAAGTCTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCCGCCGACTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

226

Amino Acids

25.02

Weight (kDa)

5.97

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	344
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	5 cut(s)	99, 116, 139, 155, 666
AclWI	GGATC	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	52, 403
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	2 cut(s)	98, 531
AgsI	TTSAA	4 cut(s)	20, 58, 227, 421
AjnI	CCWGG	1 cut(s)	595
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	3 cut(s)	61, 643, 677
AluI	AGCT	3 cut(s)	61, 643, 677
Alw21I	GWGCWC	1 cut(s)	645
Alw26I	GTCTC	1 cut(s)	637
AlwI	GGATC	1 cut(s)	348
Ama87I	CYCGRG	3 cut(s)	215, 304, 604
Aor13HI	TCCGGA	1 cut(s)	659
AoxI	GGCC	3 cut(s)	178, 255, 607
ApeKI	GCWGC	1 cut(s)	127
ApoI	RAATTY	2 cut(s)	52, 403
Asp700I	GAANNNNTTC	2 cut(s)	276, 510
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	3 cut(s)	178, 255, 607
AsuC2I	CCSGG	4 cut(s)	75, 143, 342, 568
AsuHPI	GGTGA	2 cut(s)	27, 405
AvaI	CYCGRG	3 cut(s)	215, 304, 604
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	2 cut(s)	148, 645
BauI	CACGAG	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	269, 271
Bbv12I	GWGCWC	1 cut(s)	645
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	600, 664
BceAI	ACGGC	1 cut(s)	594
BciT130I	CCWGG	1 cut(s)	597
BcnI	CCSGG	4 cut(s)	75, 143, 342, 568
BcoDI	GTCTC	1 cut(s)	637
BisI	GCNGC	2 cut(s)	128, 666
BlpI	GCTNAGC	1 cut(s)	644
BlsI	GCNGC	2 cut(s)	129, 667
BmcAI	AGTACT	1 cut(s)	436
Bme1390I	CCNGG	5 cut(s)	75, 143, 342, 568, 597
BmeT110I	CYCGRG	3 cut(s)	215, 304, 604
BmgT120I	GGNCC	3 cut(s)	178, 255, 607
BmiI	GGNNCC	5 cut(s)	30, 147, 288, 346, 664
BmrFI	CCNGG	5 cut(s)	75, 143, 342, 568, 597
BpiI	GAAGAC	2 cut(s)	269, 271
Bpu1102I	GCTNAGC	1 cut(s)	644
BpuEI	CTTGAG	4 cut(s)	47, 158, 612, 659
BpuMI	CCSGG	4 cut(s)	75, 143, 342, 568
BsaJI	CCNNGG	2 cut(s)	471, 567
BsaWI	WCCGGW	1 cut(s)	659
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 531
BseAI	TCCGGA	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	471, 567
BseGI	GGATG	2 cut(s)	592, 656
BseLI	CCNNNNNNNGG	2 cut(s)	98, 531
BseMII	CTCAG	1 cut(s)	658
BseRI	GAGGAG	2 cut(s)	498, 501
BseXI	GCAGC	1 cut(s)	139
BsgI	GTGCAG	1 cut(s)	146
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	3 cut(s)	180, 257, 609
BshNI	GGYRCC	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	645
BsiHKCI	CYCGRG	3 cut(s)	215, 304, 604
BsiSI	CCGG	5 cut(s)	74, 142, 341, 567, 660
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	98, 531
BsmAI	GTCTC	1 cut(s)	637
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	180, 257, 609
BsoBI	CYCGRG	3 cut(s)	215, 304, 604
Bsp1286I	GDGCHC	2 cut(s)	148, 645
Bsp13I	TCCGGA	1 cut(s)	659
Bsp143I	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
Bsp1720I	GCTNAGC	1 cut(s)	644
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	5 cut(s)	99, 116, 139, 155, 666
BspANI	GGCC	3 cut(s)	180, 257, 609
BspCNI	CTCAG	1 cut(s)	657
BspEI	TCCGGA	1 cut(s)	659
BspLI	GGNNCC	5 cut(s)	30, 147, 288, 346, 664
BspPI	GGATC	1 cut(s)	348
BspT107I	GGYRCC	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	471, 567
BssMI	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
BssSI	CACGAG	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	122
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	3 cut(s)	434, 587, 620
Bst6I	CTCTTC	1 cut(s)	516
BstDEI	CTNAG	4 cut(s)	164, 644, 673, 678
BstDSI	CCRYGG	1 cut(s)	471
BstEII	GGTNACC	2 cut(s)	548, 587
BstF5I	GGATG	2 cut(s)	592, 656
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	6 cut(s)	234, 262, 356, 364, 493, 504
BstMAI	GTCTC	1 cut(s)	637
BstMBI	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 674
BstNI	CCWGG	1 cut(s)	597
BstPI	GGTNACC	2 cut(s)	548, 587
BstSCI	CCNGG	5 cut(s)	73, 141, 340, 566, 595
BstV1I	GCAGC	1 cut(s)	139
BstV2I	GAAGAC	2 cut(s)	269, 271
BstX2I	RGATCY	1 cut(s)	353
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	3 cut(s)	180, 257, 609
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	592, 656
BtsIMutI	CAGTG	1 cut(s)	625
CfoI	GCGC	1 cut(s)	581
Cfr13I	GGNCC	3 cut(s)	178, 255, 607
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	2 cut(s)	392, 472
CviQI	GTAC	1 cut(s)	435
DdeI	CTNAG	4 cut(s)	164, 644, 673, 678
DpnI	GATC	6 cut(s)	233, 261, 355, 363, 492, 503
DpnII	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	643
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	2 cut(s)	148, 645
Eco53kI	GAGCTC	1 cut(s)	643
Eco88I	CYCGRG	3 cut(s)	215, 304, 604
Eco91I	GGTNACC	2 cut(s)	548, 587
EcoICRI	GAGCTC	1 cut(s)	643
EcoO109I	RGGNCCY	1 cut(s)	178
EcoO65I	GGTNACC	2 cut(s)	548, 587
EcoRII	CCWGG	1 cut(s)	595
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	148, 645
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	2 cut(s)	395, 475
FaiI	YATR	5 cut(s)	189, 393, 473, 531, 583
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 621, 653
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	2 cut(s)	391, 471
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	128, 666
FokI	GGATG	2 cut(s)	579, 643
FriOI	GRGCYC	2 cut(s)	148, 645
Fsp4HI	GCNGC	2 cut(s)	128, 666
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	2 cut(s)	128, 666
HaeIII	GGCC	3 cut(s)	180, 257, 609
HapII	CCGG	5 cut(s)	74, 142, 341, 567, 660
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	2 cut(s)	395, 475
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	3 cut(s)	385, 397, 464
HindII	GTYRAC	3 cut(s)	385, 397, 464
HinfI	GANTC	2 cut(s)	169, 223
HpaII	CCGG	5 cut(s)	74, 142, 341, 567, 660
HphI	GGTGA	2 cut(s)	27, 405
Hpy166II	GTNNAC	3 cut(s)	385, 397, 464
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	7 cut(s)	64, 215, 227, 290, 304, 638, 660
Hpy8I	GTNNAC	3 cut(s)	385, 397, 464
Hpy99I	CGWCG	1 cut(s)	362
HpyAV	CCTTC	5 cut(s)	26, 42, 75, 317, 454
HpyCH4III	ACNGT	3 cut(s)	434, 587, 620
HpyCH4IV	ACGT	2 cut(s)	274, 381
HpyCH4V	TGCA	2 cut(s)	127, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 674
HpyF3I	CTNAG	4 cut(s)	164, 644, 673, 678
HpySE526I	ACGT	2 cut(s)	274, 381
Hsp92II	CATG	2 cut(s)	395, 475
HspAI	GCGC	1 cut(s)	579
Kpn2I	TCCGGA	1 cut(s)	659
Kzo9I	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
LmnI	GCTCC	3 cut(s)	28, 151, 662
Lsp1109I	GCAGC	1 cut(s)	139
MaeII	ACGT	2 cut(s)	274, 381
MaeIII	GTNAC	3 cut(s)	548, 587, 611
MalI	GATC	6 cut(s)	233, 261, 355, 363, 492, 503
MboI	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
MboII	GAAGA	4 cut(s)	90, 269, 276, 503
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	2 cut(s)	148, 645
MluCI	AATT	2 cut(s)	52, 403
MroI	TCCGGA	1 cut(s)	659
MroXI	GAANNNNTTC	2 cut(s)	276, 510
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	99
MspI	CCGG	5 cut(s)	74, 142, 341, 567, 660
MspR9I	CCNGG	5 cut(s)	75, 143, 342, 568, 597
MvaI	CCWGG	1 cut(s)	597
MwoI	GCNNNNNNNGC	2 cut(s)	124, 674
NciI	CCSGG	4 cut(s)	75, 143, 342, 568
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
NlaIII	CATG	2 cut(s)	395, 475
NlaIV	GGNNCC	5 cut(s)	30, 147, 288, 346, 664
PdmI	GAANNNNTTC	2 cut(s)	276, 510
PfeI	GAWTC	2 cut(s)	169, 223
PkrI	GCNGC	2 cut(s)	129, 667
Ple19I	CGATCG	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	595
PspEI	GGTNACC	2 cut(s)	548, 587
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	5 cut(s)	30, 147, 288, 346, 664
PspPI	GGNCC	3 cut(s)	178, 255, 607
PsuI	RGATCY	1 cut(s)	353
PvuI	CGATCG	1 cut(s)	262
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	645
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	2 cut(s)	128, 666
Sau3AI	GATC	6 cut(s)	231, 259, 353, 361, 490, 501
Sau96I	GGNCC	3 cut(s)	178, 255, 607
ScaI	AGTACT	1 cut(s)	436
ScrFI	CCNGG	5 cut(s)	75, 143, 342, 568, 597
SduI	GDGCHC	2 cut(s)	148, 645
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	4 cut(s)	62, 173, 627, 638
SmoI	CTYRAG	4 cut(s)	62, 173, 627, 638
Sse9I	AATT	2 cut(s)	52, 403
SsiI	CCGC	5 cut(s)	99, 116, 139, 155, 666
SstI	GAGCTC	1 cut(s)	645
StyD4I	CCNGG	5 cut(s)	73, 141, 340, 566, 595
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	3 cut(s)	434, 587, 620
TaiI	ACGT	2 cut(s)	277, 384
TaqI	TCGA	5 cut(s)	244, 262, 360, 447, 504
TasI	AATT	2 cut(s)	52, 403
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	668
TfiI	GAWTC	2 cut(s)	169, 223
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	625
TseI	GCWGC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	346
TspRI	CASTG	1 cut(s)	625
XapI	RAATTY	2 cut(s)	52, 403
XmnI	GAANNNNTTC	2 cut(s)	276, 510
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.