Rroxscaffold_7G00184060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Forward (+)
23242778 .. 23243164
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184060.1

Sequence Viewer

Length: 387 bp
ATGCGAAGCGTTTGGGCCGATCGAAGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCCCGAGAGAGCCAACGGATGAAGGCATTTCGGAAAGTCCGGGTTGGAGGATCTCTCGATCTCAACTTTGGACCTGCAAGTTCTGCGGATGAGGGTGGATCCATTGCTGCGAACTTTGGTTCCACCGATCCAATAGGTGCCGATAGATCCGTCGATCTATCTTTTGGGTCAAACGTCAACTATCATGTTGACCCAAATTCCACTTCACCTTTCAACAACAACAACGGTACTACCTCCTTCGACACAACAGGAGGTCAACTATCCATGGAACAAAGAGGAGGAGATCAGCGGGGAGATCGAAACTCTTCCTCTCGTTCCCGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.85

Weight (kDa)

9.95

Isoelectric Point (pI)

38.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 142
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 2 cut(s) 146, 349
AclWI GGATC 5 cut(s) 118, 153, 166, 182, 201
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 1 cut(s) 289
AgsI TTSAA 1 cut(s) 274
AjuI GAANNNNNNNTTGG 2 cut(s) 247, 279
AloI GAACNNNNNNTCC 4 cut(s) 44, 76, 164, 196
AlwI GGATC 5 cut(s) 118, 153, 166, 182, 201
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 1 cut(s) 256
Asp700I GAANNNNTTC 2 cut(s) 36, 364
AspS9I GGNCC 2 cut(s) 15, 131
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 258
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 131
BamHI GGATCC 1 cut(s) 158
BanI GGYRCC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 29, 31
BbvI GCAGC 1 cut(s) 154
BcnI CCSGG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 15, 131
BmiI GGNNCC 4 cut(s) 48, 160, 181, 199
BmrFI CCNGG 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 29, 31
BplI GAGNNNNNCTC 2 cut(s) 99, 131
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 324
Bse3DI GCAATG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 84, 154
BseMI GCAATG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 351, 354
BseXI GCAGC 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 22
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 100
BsnI GGCC 1 cut(s) 17
BsoBI CYCGRG 1 cut(s) 63
Bsp143I GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 2 cut(s) 146, 349
BspANI GGCC 1 cut(s) 17
BspLI GGNNCC 4 cut(s) 48, 160, 181, 199
BspMI ACCTGC 1 cut(s) 142
BspPI GGATC 5 cut(s) 118, 153, 166, 182, 201
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 324
BssMI GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
BssT1I CCWWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 370
BstAPI GCANNNNNTGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 2 cut(s) 84, 154
BstKTI GATC 9 cut(s) 22, 113, 121, 161, 190, 209, 217, 346, 358
BstMBI GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 154
BstV2I GAAGAC 2 cut(s) 29, 31
BstX2I RGATCY 3 cut(s) 110, 158, 206
BstYI RGATCY 3 cut(s) 110, 158, 206
BsuRI GGCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 2 cut(s) 84, 154
BveI ACCTGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 15, 131
Csp6I GTAC 1 cut(s) 288
CviAII CATG 2 cut(s) 245, 325
CviJI RGCY 2 cut(s) 17, 72
CviKI_1 RGCY 2 cut(s) 17, 72
CviQI GTAC 1 cut(s) 288
DpnI GATC 9 cut(s) 21, 112, 120, 160, 189, 208, 216, 345, 357
DpnII GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
DrdI GACNNNNNNGTC 1 cut(s) 33
DseDI GACNNNNNNGTC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 2 cut(s) 248, 328
FaiI YATR 3 cut(s) 246, 326, 385
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FatI CATG 2 cut(s) 244, 324
FauI CCCGC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 91, 161
Fsp4HI GCNGC 1 cut(s) 168
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 17
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 248, 328
HincII GTYRAC 3 cut(s) 238, 250, 317
HindII GTYRAC 3 cut(s) 238, 250, 317
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 3 cut(s) 238, 250, 317
Hpy188I TCNGA 2 cut(s) 51, 93
Hpy188III TCNNGA 2 cut(s) 63, 116
Hpy8I GTNNAC 3 cut(s) 238, 250, 317
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 76, 307
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 2 cut(s) 34, 234
HpyCH4V TGCA 2 cut(s) 137, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpySE526I ACGT 2 cut(s) 34, 234
Hsp92II CATG 2 cut(s) 248, 328
Kzo9I GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
LpnPI CCDG 3 cut(s) 113, 147, 294
Lsp1109I GCAGC 1 cut(s) 154
MaeII ACGT 2 cut(s) 34, 234
MalI GATC 9 cut(s) 21, 112, 120, 160, 189, 208, 216, 345, 357
MboI GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
MboII GAAGA 3 cut(s) 29, 36, 357
MflI RGATCY 3 cut(s) 110, 158, 206
MluCI AATT 1 cut(s) 256
MmeI TCCRAC 1 cut(s) 85
MnlI CCTC 8 cut(s) 65, 101, 145, 304, 305, 329, 332, 379
MroXI GAANNNNTTC 2 cut(s) 36, 364
MspA1I CMGCKG 1 cut(s) 349
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 324
NdeII GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
NlaIII CATG 2 cut(s) 248, 328
NlaIV GGNNCC 4 cut(s) 48, 160, 181, 199
PdmI GAANNNNTTC 2 cut(s) 36, 364
PkrI GCNGC 1 cut(s) 169
Ple19I CGATCG 1 cut(s) 22
PspN4I GGNNCC 4 cut(s) 48, 160, 181, 199
PspPI GGNCC 2 cut(s) 15, 131
PsuI RGATCY 3 cut(s) 110, 158, 206
PvuI CGATCG 1 cut(s) 22
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 9 cut(s) 19, 110, 118, 158, 187, 206, 214, 343, 355
Sau96I GGNCC 2 cut(s) 15, 131
ScrFI CCNGG 1 cut(s) 101
SetI ASST 8 cut(s) 37, 57, 136, 199, 237, 271, 296, 316
SinI GGWCC 1 cut(s) 131
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 146, 349
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 2 cut(s) 37, 237
TaqI TCGA 5 cut(s) 22, 117, 213, 300, 358
TasI AATT 1 cut(s) 256
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 2 cut(s) 91, 199
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 256
XmnI GAANNNNTTC 2 cut(s) 36, 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.