Rroxscaffold_7G00199440

Homeodomain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Reverse (-)
46056330 .. 46056953
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199440.1

Sequence Viewer

Length: 624 bp
ATGGAACCACGAACTCTTCAACTATTGGAGCCTCAAACCCAACAACAAACGGAATTTCAAGCCCGAATCAACCGGGGAGGGAGGAAGCAACCAATCGGCGGGAGTAGTAGTGCCAATGCCCGTCGAGCAGCACGGTACTGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCAAGAGATCCGCCTCGATCGAACGATTCGGGCCGATCGAGGACAAAAACGTCTTCTTTTGGTTCCGAACCTCAAATCCCGAGAGAGCCAACAGATGAAGGCATTTCGGAACGTGTGGGTTGGCGGATCTCTCGATCTCAACTTTGGGCCCGCAAGTTCTACGGATGAAGGTGGACCCATCGATTTGAACTTTGGTCCCACTTGTTCCTACAGTGCCGATAGATCCATCTATCTCGCTTTCGGGTCAAACGTCGACCATCCCGTCGACCCGAATTCCACTTCACCCTTCAACAACAACAACAGTATTACCTCCTTCGGCACAACGGAGGTCAACCATCCATGGAACAAAGTGGAGGAGATCGGCGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox

Protein Analysis

207

Amino Acids

23.2

Weight (kDa)

9.8

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 273, 485
AccI GTMKAC 2 cut(s) 477, 489
AciI CCGC 6 cut(s) 99, 155, 235, 348, 375, 588
AclWI GGATC 3 cut(s) 226, 358, 441
AcsI RAATTY 2 cut(s) 53, 496
AfaI GTAC 1 cut(s) 137
AfiI CCNNNNNNNGG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 5 cut(s) 20, 59, 227, 412, 514
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AlwI GGATC 3 cut(s) 226, 358, 441
Ama87I CYCGRG 2 cut(s) 215, 303
AoxI GGCC 3 cut(s) 178, 255, 371
ApaI GGGCCC 1 cut(s) 375
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 53, 496
Asp700I GAANNNNTTC 1 cut(s) 601
AspS9I GGNCC 6 cut(s) 178, 255, 371, 372, 398, 419
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 498
AvaI CYCGRG 2 cut(s) 215, 303
AvaII GGWCC 2 cut(s) 398, 419
BaeGI GKGCMC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 140
BccI CCATC 4 cut(s) 410, 458, 489, 567
BcnI CCSGG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 433
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 398, 419
BmeT110I CYCGRG 2 cut(s) 215, 303
BmgT120I GGNCC 6 cut(s) 178, 255, 371, 372, 398, 419
BmiI GGNNCC 6 cut(s) 6, 30, 288, 373, 400, 421
BmrFI CCNGG 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 74
Bsa29I ATCGAT 1 cut(s) 405
BsaJI CCNNGG 2 cut(s) 73, 563
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 405
BseDI CCNNGG 2 cut(s) 73, 563
BseGI GGATG 3 cut(s) 394, 481, 559
BseLI CCNNNNNNNGG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 593
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 140
Bsh1285I CGRYCG 2 cut(s) 244, 262
BshFI GGCC 3 cut(s) 180, 257, 373
BshVI ATCGAT 1 cut(s) 405
BsiEI CGRYCG 2 cut(s) 244, 262
BsiHKCI CYCGRG 2 cut(s) 215, 303
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 405
BsnI GGCC 3 cut(s) 180, 257, 373
BsoBI CYCGRG 2 cut(s) 215, 303
Bsp120I GGGCCC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
Bsp19I CCATGG 1 cut(s) 563
BspACI CCGC 6 cut(s) 99, 155, 235, 348, 375, 588
BspANI GGCC 3 cut(s) 180, 257, 373
BspDI ATCGAT 1 cut(s) 405
BspLI GGNNCC 6 cut(s) 6, 30, 288, 373, 400, 421
BspPI GGATC 3 cut(s) 226, 358, 441
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 73, 563
BssMI GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
BssT1I CCWWGG 1 cut(s) 563
Bst4CI ACNGT 3 cut(s) 135, 437, 527
Bst6I CTCTTC 2 cut(s) 21, 607
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 3 cut(s) 394, 481, 559
BstKTI GATC 8 cut(s) 234, 244, 262, 353, 361, 449, 585, 595
BstMBI GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
BstMCI CGRYCG 2 cut(s) 244, 262
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 433
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 3 cut(s) 231, 350, 446
BstYI RGATCY 3 cut(s) 231, 350, 446
Bsu15I ATCGAT 1 cut(s) 405
BsuRI GGCC 3 cut(s) 180, 257, 373
BsuTUI ATCGAT 1 cut(s) 405
BtgI CCRYGG 1 cut(s) 563
BtsCI GGATG 3 cut(s) 394, 481, 559
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 1 cut(s) 375
Cfr13I GGNCC 6 cut(s) 178, 255, 371, 372, 398, 419
ClaI ATCGAT 1 cut(s) 405
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 136
CviAII CATG 1 cut(s) 564
CviJI RGCY 7 cut(s) 31, 62, 180, 198, 257, 312, 373
CviKI_1 RGCY 7 cut(s) 31, 62, 180, 198, 257, 312, 373
CviQI GTAC 1 cut(s) 136
DdeI CTNAG 1 cut(s) 164
DpnI GATC 8 cut(s) 233, 243, 261, 352, 360, 448, 584, 594
DpnII GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
DrdI GACNNNNNNGTC 2 cut(s) 273, 485
DseDI GACNNNNNNGTC 2 cut(s) 273, 485
Eam1104I CTCTTC 2 cut(s) 21, 607
EarI CTCTTC 2 cut(s) 21, 607
EciI GGCGGA 3 cut(s) 224, 363, 603
Eco130I CCWWGG 1 cut(s) 563
Eco24I GRGCYC 1 cut(s) 375
Eco47I GGWCC 2 cut(s) 398, 419
Eco88I CYCGRG 2 cut(s) 215, 303
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 496
EcoT14I CCWWGG 1 cut(s) 563
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 1 cut(s) 567
FaiI YATR 3 cut(s) 189, 565, 622
FaqI GGGAC 1 cut(s) 405
FatI CATG 1 cut(s) 563
FauI CCCGC 2 cut(s) 92, 382
FblI GTMKAC 2 cut(s) 477, 489
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 3 cut(s) 401, 468, 546
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 3 cut(s) 180, 257, 373
HapII CCGG 1 cut(s) 73
HgaI GACGC 1 cut(s) 194
Hin1II CATG 1 cut(s) 567
HincII GTYRAC 3 cut(s) 478, 490, 556
HindII GTYRAC 3 cut(s) 478, 490, 556
HinfI GANTC 5 cut(s) 66, 145, 168, 223, 250
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 498
Hpy166II GTNNAC 5 cut(s) 144, 398, 478, 490, 556
Hpy188I TCNGA 2 cut(s) 291, 333
Hpy188III TCNNGA 4 cut(s) 215, 227, 303, 356
Hpy8I GTNNAC 5 cut(s) 144, 398, 478, 490, 556
Hpy99I CGWCG 3 cut(s) 126, 479, 491
HpyAV CCTTC 4 cut(s) 316, 386, 520, 547
HpyCH4III ACNGT 3 cut(s) 135, 437, 527
HpyCH4IV ACGT 3 cut(s) 274, 336, 474
HpyCH4V TGCA 1 cut(s) 620
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 164
HpySE526I ACGT 3 cut(s) 274, 336, 474
Hsp92II CATG 1 cut(s) 567
Kzo9I GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 86, 124
Lsp1109I GCAGC 1 cut(s) 140
MaeII ACGT 3 cut(s) 274, 336, 474
MalI GATC 8 cut(s) 233, 243, 261, 352, 360, 448, 584, 594
MboI GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
MboII GAAGA 3 cut(s) 8, 269, 594
MflI RGATCY 3 cut(s) 231, 350, 446
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 2 cut(s) 53, 496
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 601
MseI TTAA 1 cut(s) 201
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 125
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 563
NdeII GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
NlaIII CATG 1 cut(s) 567
NlaIV GGNNCC 6 cut(s) 6, 30, 288, 373, 400, 421
PcsI WCGNNNNNNNCGW 3 cut(s) 259, 471, 483
PdmI GAANNNNTTC 1 cut(s) 601
PfeI GAWTC 4 cut(s) 66, 168, 223, 250
PkrI GCNGC 1 cut(s) 130
Ple19I CGATCG 2 cut(s) 244, 262
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PspN4I GGNNCC 6 cut(s) 6, 30, 288, 373, 400, 421
PspOMI GGGCCC 1 cut(s) 371
PspPI GGNCC 6 cut(s) 178, 255, 371, 372, 398, 419
PsuI RGATCY 3 cut(s) 231, 350, 446
PvuI CGATCG 2 cut(s) 244, 262
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SalI GTCGAC 2 cut(s) 476, 488
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 8 cut(s) 231, 241, 259, 350, 358, 446, 582, 592
Sau96I GGNCC 6 cut(s) 178, 255, 371, 372, 398, 419
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 375
SetI ASST 7 cut(s) 277, 297, 339, 397, 477, 536, 555
SfcI CTRYAG 1 cut(s) 433
SinI GGWCC 2 cut(s) 398, 419
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 2 cut(s) 53, 496
SsiI CCGC 6 cut(s) 99, 155, 235, 348, 375, 588
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 563
TaaI ACNGT 3 cut(s) 135, 437, 527
TaiI ACGT 3 cut(s) 277, 339, 477
TaqI TCGA 9 cut(s) 124, 240, 244, 262, 357, 405, 477, 489, 595
TasI AATT 2 cut(s) 53, 496
TfiI GAWTC 4 cut(s) 66, 168, 223, 250
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 442
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 2 cut(s) 335, 405
TspGWI ACGGA 3 cut(s) 65, 401, 563
TspRI CASTG 1 cut(s) 442
VpaK11BI GGWCC 2 cut(s) 398, 419
XapI RAATTY 2 cut(s) 53, 496
XmiI GTMKAC 2 cut(s) 477, 489
XmnI GAANNNNTTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.