Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

10357579 .. 10358157

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAATTTCAAGCCCATCAACCAACCGGGGAGGGAGGAAGCAACCAAGCAGCGGGAGTAGTGCCAATATGCACGTCGGGCAGCACGGTACCGGTGGACTCCCACACGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCAAGAGATCTACCTCGGTCCGAAGCGGTTCGGGCCGATCGAGGACAAAAACGTCTTCTTTTGGTTCCGAACCTCAAATCCCGAGAGAGCCAACGAGATGAAGGCATTTCGGAACGTTCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATTTGAACTTTGGTCCCACTGTTCCTACAGTACCGATGGATCCATCTATCTCGCTTTCGGGTCAAACGTCGACCATCCTGTCGACCCGAATTCCACTTCACCCTTCAATAATAACAACGGTACTACCTCCTTCGGCACAACGGAGGACAACTTTCTATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

192

Amino Acids

20.89

Weight (kDa)

9.66

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	227, 439
Acc65I	GGTACC	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	88
AccI	GTMKAC	2 cut(s)	431, 443
AciI	CCGC	4 cut(s)	53, 202, 303, 330
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	5 cut(s)	313, 348, 361, 395, 408
AcsI	RAATTY	2 cut(s)	5, 450
AfaI	GTAC	3 cut(s)	90, 393, 483
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	4 cut(s)	11, 179, 367, 468
AjiI	CACGTC	1 cut(s)	75
AloI	GAACNNNNNNTCC	2 cut(s)	238, 270
AlwI	GGATC	5 cut(s)	313, 348, 361, 395, 408
Ama87I	CYCGRG	2 cut(s)	167, 257
AoxI	GGCC	2 cut(s)	130, 209
ApeKI	GCWGC	2 cut(s)	50, 81
ApoI	RAATTY	2 cut(s)	5, 450
AsiGI	ACCGGT	1 cut(s)	91
Asp700I	GAANNNNTTC	2 cut(s)	203, 556
Asp718I	GGTACC	1 cut(s)	88
AspS9I	GGNCC	5 cut(s)	130, 194, 209, 326, 374
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	452
AvaI	CYCGRG	2 cut(s)	167, 257
AvaII	GGWCC	3 cut(s)	194, 326, 374
BamHI	GGATCC	2 cut(s)	353, 400
BanI	GGYRCC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	62, 93
BccI	CCATC	5 cut(s)	24, 365, 391, 412, 443
BcnI	CCSGG	1 cut(s)	28
BfmI	CTRYAG	1 cut(s)	387
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	2 cut(s)	51, 82
BlsI	GCNGC	2 cut(s)	52, 83
Bme1390I	CCNGG	1 cut(s)	28
Bme18I	GGWCC	3 cut(s)	194, 326, 374
BmeT110I	CYCGRG	2 cut(s)	167, 257
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	5 cut(s)	130, 194, 209, 326, 374
BmiI	GGNNCC	6 cut(s)	90, 242, 328, 355, 376, 402
BmrFI	CCNGG	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	28
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	27, 190
BsaWI	WCCGGW	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse118I	RCCGGY	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	27, 190
BseGI	GGATG	2 cut(s)	349, 435
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseRI	GAGGAG	2 cut(s)	544, 547
BseXI	GCAGC	2 cut(s)	62, 93
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	132, 211
BshNI	GGYRCC	1 cut(s)	88
BshTI	ACCGGT	1 cut(s)	91
BshVI	ATCGAT	1 cut(s)	360
BsiEI	CGRYCG	1 cut(s)	216
BsiHKCI	CYCGRG	2 cut(s)	167, 257
BsiSI	CCGG	2 cut(s)	27, 92
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	132, 211
BsoBI	CYCGRG	2 cut(s)	167, 257
Bsp143I	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
BspACI	CCGC	4 cut(s)	53, 202, 303, 330
BspANI	GGCC	2 cut(s)	132, 211
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	6 cut(s)	90, 242, 328, 355, 376, 402
BspPI	GGATC	5 cut(s)	313, 348, 361, 395, 408
BspT107I	GGYRCC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	27, 190
BssMI	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
Bst4CI	ACNGT	4 cut(s)	88, 382, 391, 481
Bst6I	CTCTTC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	349, 435
BstKTI	GATC	8 cut(s)	186, 216, 308, 316, 356, 403, 539, 550
BstMBI	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
BstMCI	CGRYCG	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 208
BstSCI	CCNGG	1 cut(s)	26
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	62, 93
BstV2I	GAAGAC	1 cut(s)	223
BstX2I	RGATCY	4 cut(s)	183, 305, 353, 400
BstYI	RGATCY	4 cut(s)	183, 305, 353, 400
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	132, 211
BsuTUI	ATCGAT	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	349, 435
BtsIMutI	CAGTG	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	5 cut(s)	130, 194, 209, 326, 374
ClaI	ATCGAT	1 cut(s)	360
CpoI	CGGWCCG	1 cut(s)	194
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	89, 392, 482
CspAI	ACCGGT	1 cut(s)	91
CspI	CGGWCCG	1 cut(s)	194
CviJI	RGCY	5 cut(s)	14, 132, 150, 211, 266
CviKI_1	RGCY	5 cut(s)	14, 132, 150, 211, 266
CviQI	GTAC	3 cut(s)	89, 392, 482
DdeI	CTNAG	1 cut(s)	116
DpnI	GATC	8 cut(s)	185, 215, 307, 315, 355, 402, 538, 549
DpnII	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
DrdI	GACNNNNNNGTC	2 cut(s)	227, 439
DseDI	GACNNNNNNGTC	2 cut(s)	227, 439
Eam1104I	CTCTTC	1 cut(s)	562
EarI	CTCTTC	1 cut(s)	562
EciI	GGCGGA	1 cut(s)	318
Eco47I	GGWCC	3 cut(s)	194, 326, 374
Eco88I	CYCGRG	2 cut(s)	167, 257
EcoO109I	RGGNCCY	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	450
FaiI	YATR	4 cut(s)	70, 141, 519, 577
FaqI	GGGAC	1 cut(s)	360
FauI	CCCGC	2 cut(s)	46, 337
FblI	GTMKAC	2 cut(s)	431, 443
Fnu4HI	GCNGC	2 cut(s)	51, 82
FokI	GGATG	2 cut(s)	356, 422
Fsp4HI	GCNGC	2 cut(s)	51, 82
GluI	GCNGC	2 cut(s)	51, 82
HaeIII	GGCC	2 cut(s)	132, 211
HapII	CCGG	2 cut(s)	27, 92
HgaI	GACGC	1 cut(s)	146
HincII	GTYRAC	2 cut(s)	432, 444
HindII	GTYRAC	2 cut(s)	432, 444
HinfI	GANTC	3 cut(s)	98, 120, 175
HpaII	CCGG	2 cut(s)	27, 92
HphI	GGTGA	1 cut(s)	452
Hpy166II	GTNNAC	3 cut(s)	97, 432, 444
Hpy188I	TCNGA	3 cut(s)	198, 245, 288
Hpy188III	TCNNGA	4 cut(s)	167, 179, 257, 311
Hpy8I	GTNNAC	3 cut(s)	97, 432, 444
Hpy99I	CGWCG	2 cut(s)	79, 433
HpyAV	CCTTC	4 cut(s)	271, 341, 474, 501
HpyCH4III	ACNGT	4 cut(s)	88, 382, 391, 481
HpyCH4IV	ACGT	4 cut(s)	74, 228, 291, 428
HpyCH4V	TGCA	2 cut(s)	72, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 208
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	4 cut(s)	74, 228, 291, 428
KpnI	GGTACC	1 cut(s)	92
Kzo9I	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
LpnPI	CCDG	4 cut(s)	40, 105, 452, 528
Lsp1109I	GCAGC	2 cut(s)	62, 93
MaeII	ACGT	4 cut(s)	74, 228, 291, 428
MalI	GATC	8 cut(s)	185, 215, 307, 315, 355, 402, 538, 549
MboI	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
MboII	GAAGA	2 cut(s)	223, 549
MflI	RGATCY	4 cut(s)	183, 305, 353, 400
MluCI	AATT	2 cut(s)	5, 450
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	185
MroXI	GAANNNNTTC	2 cut(s)	203, 556
MseI	TTAA	1 cut(s)	153
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	2 cut(s)	27, 92
MspR9I	CCNGG	1 cut(s)	28
MwoI	GCNNNNNNNGC	2 cut(s)	78, 208
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
NlaIV	GGNNCC	6 cut(s)	90, 242, 328, 355, 376, 402
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 425
PdmI	GAANNNNTTC	2 cut(s)	203, 556
PfeI	GAWTC	2 cut(s)	120, 175
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	52, 83
Ple19I	CGATCG	1 cut(s)	216
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	291
PspN4I	GGNNCC	6 cut(s)	90, 242, 328, 355, 376, 402
PspPI	GGNCC	5 cut(s)	130, 194, 209, 326, 374
PsuI	RGATCY	4 cut(s)	183, 305, 353, 400
PvuI	CGATCG	1 cut(s)	216
RsaI	GTAC	3 cut(s)	90, 393, 483
RsaNI	GTAC	3 cut(s)	89, 392, 482
Rsr2I	CGGWCCG	1 cut(s)	194
RsrII	CGGWCCG	1 cut(s)	194
SalI	GTCGAC	2 cut(s)	430, 442
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	2 cut(s)	51, 82
Sau3AI	GATC	8 cut(s)	183, 213, 305, 313, 353, 400, 536, 547
Sau96I	GGNCC	5 cut(s)	130, 194, 209, 326, 374
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	28
SetI	ASST	8 cut(s)	77, 192, 231, 251, 294, 352, 431, 490
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	3 cut(s)	194, 326, 374
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	5, 450
SsiI	CCGC	4 cut(s)	53, 202, 303, 330
StyD4I	CCNGG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	88, 382, 391, 481
TaiI	ACGT	4 cut(s)	77, 231, 294, 431
TaqI	TCGA	6 cut(s)	216, 312, 360, 431, 443, 550
TaqII	GACCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	5, 450
TfiI	GAWTC	2 cut(s)	120, 175
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	385
TseI	GCWGC	2 cut(s)	50, 81
TspDTI	ATGAA	2 cut(s)	290, 360
TspGWI	ACGGA	2 cut(s)	356, 517
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	3 cut(s)	194, 326, 374
XapI	RAATTY	2 cut(s)	5, 450
XmiI	GTMKAC	2 cut(s)	431, 443
XmnI	GAANNNNTTC	2 cut(s)	203, 556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.