Rroxscaffold_2G00087210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000483
Physical Location & Seq
Reverse (-)
9301185 .. 9301493
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087210.1

Sequence Viewer

Length: 309 bp
ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCATGTTCTATCGATGAAGGTGGATCCATTGATCTAAACTTTGGGTCCACCGATCCTACAGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTTGGCCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCCGTACTATTTCCTTTGGCACAACAGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCGGCAGGAGATCGAAACTCTTCCTCCGTTCCCCGTGCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.89

Weight (kDa)

8.06

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 57
AclI AACGTT 1 cut(s) 18
AclWI GGATC 7 cut(s) 40, 75, 88, 104, 122, 135, 156
AcoI YGGCCR 1 cut(s) 159
AfaI GTAC 1 cut(s) 210
AgsI TTSAA 2 cut(s) 141, 195
Alw21I GWGCWC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 7 cut(s) 40, 75, 88, 104, 122, 135, 156
AoxI GGCC 1 cut(s) 159
ApaLI GTGCAC 1 cut(s) 300
Asp700I GAANNNNTTC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 53, 102
AsuHPI GGTGA 1 cut(s) 179
AvaII GGWCC 2 cut(s) 53, 102
BaeGI GKGCMC 1 cut(s) 304
BalI TGGCCA 1 cut(s) 161
BamHI GGATCC 2 cut(s) 80, 127
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 114
Bme18I GGWCC 2 cut(s) 53, 102
BmgT120I GGNCC 2 cut(s) 53, 102
BmiI GGNNCC 4 cut(s) 55, 82, 103, 129
Bsa29I ATCGAT 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
BseCI ATCGAT 1 cut(s) 69
BseRI GAGGAG 3 cut(s) 174, 271, 274
BseSI GKGCMC 1 cut(s) 304
BshFI GGCC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 304
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 161
BspDI ATCGAT 1 cut(s) 69
BspLI GGNNCC 4 cut(s) 55, 82, 103, 129
BspPI GGATC 7 cut(s) 40, 75, 88, 104, 122, 135, 156
BssMI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
Bst4CI ACNGT 2 cut(s) 118, 306
Bst6I CTCTTC 1 cut(s) 289
BstKTI GATC 9 cut(s) 35, 43, 83, 91, 112, 130, 151, 266, 277
BstMBI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
BstNSI RCATGY 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 304
BstX2I RGATCY 3 cut(s) 32, 80, 127
BstYI RGATCY 3 cut(s) 32, 80, 127
Bsu15I ATCGAT 1 cut(s) 69
BsuRI GGCC 1 cut(s) 161
BsuTUI ATCGAT 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 123
Cfr13I GGNCC 2 cut(s) 53, 102
ClaI ATCGAT 1 cut(s) 69
Csp6I GTAC 1 cut(s) 209
CviAII CATG 3 cut(s) 60, 152, 245
CviJI RGCY 1 cut(s) 161
CviKI_1 RGCY 1 cut(s) 161
CviQI GTAC 1 cut(s) 209
DpnI GATC 9 cut(s) 34, 42, 82, 90, 111, 129, 150, 265, 276
DpnII GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco47I GGWCC 2 cut(s) 53, 102
FaeI CATG 3 cut(s) 63, 155, 248
FaiI YATR 5 cut(s) 61, 153, 164, 177, 246
FatI CATG 3 cut(s) 59, 151, 244
FauI CCCGC 1 cut(s) 64
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 3 cut(s) 63, 155, 248
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 3 cut(s) 105, 171, 302
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 105, 171, 302
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 118, 306
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 1 cut(s) 302
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 3 cut(s) 63, 155, 248
Kzo9I GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
LpnPI CCDG 1 cut(s) 255
MaeII ACGT 1 cut(s) 18
MalI GATC 9 cut(s) 34, 42, 82, 90, 111, 129, 150, 265, 276
MboI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
MboII GAAGA 1 cut(s) 276
MflI RGATCY 3 cut(s) 32, 80, 127
MhlI GDGCHC 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 2 cut(s) 9, 141
MluNI TGGCCA 1 cut(s) 161
MnlI CCTC 6 cut(s) 192, 195, 225, 249, 252, 298
Mox20I TGGCCA 1 cut(s) 161
MroXI GAANNNNTTC 1 cut(s) 283
MscI TGGCCA 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 161
NdeII GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
NlaIII CATG 3 cut(s) 63, 155, 248
NlaIV GGNNCC 4 cut(s) 55, 82, 103, 129
NspI RCATGY 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 283
Psp1406I AACGTT 1 cut(s) 18
PspN4I GGNNCC 4 cut(s) 55, 82, 103, 129
PspPI GGNCC 2 cut(s) 53, 102
PsuI RGATCY 3 cut(s) 32, 80, 127
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
Sau3AI GATC 9 cut(s) 32, 40, 80, 88, 109, 127, 148, 263, 274
Sau96I GGNCC 2 cut(s) 53, 102
SduI GDGCHC 1 cut(s) 304
SetI ASST 4 cut(s) 21, 79, 192, 242
SfcI CTRYAG 1 cut(s) 114
SgeI CNNG 9 cut(s) 35, 50, 68, 72, 164, 218, 257, 267, 282
SinI GGWCC 2 cut(s) 53, 102
Sse9I AATT 2 cut(s) 9, 141
SsiI CCGC 1 cut(s) 57
TaaI ACNGT 2 cut(s) 118, 306
TaiI ACGT 1 cut(s) 21
TaqI TCGA 4 cut(s) 39, 69, 134, 277
TasI AATT 2 cut(s) 9, 141
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 3 cut(s) 17, 87, 233
TspGWI ACGGA 2 cut(s) 120, 280
TspRI CASTG 1 cut(s) 123
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 2 cut(s) 53, 102
XceI RCATGY 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.