Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

17693961 .. 17698258

Gene Structure 4298 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCCACCGCGTCGCCCTTGGATTCTCCGAAGACCGACTCCGAAGCCGGCAACACGGAGCCAAACCCTAACCCTAACCCTAATCCTTCAAACGCATTATTCCCCGTTTCCCCAAACGGCTATGGTGTCTCCTCTTGTCGGGGACTCCACCGGTGGTGCATTCATGGGCTCCATCTTTGGCTATGGTTTCTCCTCTTGCTCCTTCACTTTCTCGTTTATCCGCCTATTTCGTGGTTTTGCTTTGAGGAGGAAAAATTGCGGGACGTTGATTGGAAGAAGAATTCGGTGTTCAAGACAAGCACCACCTCCAACTTGGTCAAGAAGCGCTTTTCCAAAGCCTATTTCGTTGTTGGATCTACCGGTTCCATTGGAACCCAGTTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAACGAGGCTCTATTTGGTCTAGAAGACAAGCCTGTGATCATTCCCGGGGAACAAGGAGTCGTTGAGGTTGACCTAACAGCATATGTGGAGAAACACAAGTTTATTTCTGATGTAGTGCTGAATGAGAAAGTGTCTAATGATGAGTACTCCTCCTCGCTTACTATGTATTCGTGGGTGAGTAGAGCAGAGCATGGGATGCTCCGCAGTGTGGGACACTCCGACCCGAGCCTAGGAGGCTCCTTCTTTCGTATGGTGAAACTTCTTCCCCATATCTTATCGTTACTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0006081 GO:0006082 GO:0006090 GO:0006629 GO:0006644 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0008654 GO:0009058 GO:0009240 GO:0009987 GO:0016114 GO:0016491 GO:0016614 GO:0016616 GO:0019288 GO:0019637 GO:0019682 GO:0019752 GO:0030145 GO:0030604 GO:0032787 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0046490 GO:0046872 GO:0046914 GO:0048037 GO:0050661 GO:0050662 GO:0051483 GO:0051484 GO:0055114 GO:0070402 GO:0071704 GO:0090407 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 map00900 map01100 map01110 map01130

Pfam Domains

Protein Families

DXPR_C DXP_redisom_C DXP_reductoisom

Protein Analysis

234

Amino Acids

26.17

Weight (kDa)

6.06

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 221, 259, 616
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	1 cut(s)	560
AfeI	AGCGCT	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	138, 622, 644
AgeI	ACCGGT	2 cut(s)	150, 359
AgsI	TTSAA	2 cut(s)	90, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	326, 358
Alw26I	GTCTC	1 cut(s)	133
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	2 cut(s)	458, 637
Aor51HI	AGCGCT	1 cut(s)	326
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	280
AsiGI	ACCGGT	2 cut(s)	150, 359
AspA2I	CCTAGG	1 cut(s)	643
AspLEI	GCGC	1 cut(s)	327
AsuC2I	CCSGG	2 cut(s)	459, 460
AsuHPI	GGTGA	2 cut(s)	601, 679
AvaI	CYCGRG	2 cut(s)	458, 637
AvrII	CCTAGG	1 cut(s)	643
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	171
BbsI	GAAGAC	2 cut(s)	38, 444
BccI	CCATC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	450
BcnI	CCSGG	2 cut(s)	459, 460
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	3 cut(s)	434, 644, 703
BfoI	RGCGCY	1 cut(s)	328
BglI	GCCNNNNNGGC	1 cut(s)	648
BlnI	CCTAGG	1 cut(s)	643
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	459, 460
BmeT110I	CYCGRG	2 cut(s)	458, 637
BmiI	GGNNCC	5 cut(s)	60, 170, 364, 373, 652
BmrFI	CCNGG	2 cut(s)	459, 460
BmrI	ACTGGG	1 cut(s)	370
BmsI	GCATC	1 cut(s)	600
BmuI	ACTGGG	1 cut(s)	370
BpiI	GAAGAC	2 cut(s)	38, 444
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpuMI	CCSGG	2 cut(s)	459, 460
BsaJI	CCNNGG	4 cut(s)	18, 458, 459, 643
BsaWI	WCCGGW	2 cut(s)	150, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 622, 644
Bse118I	RCCGGY	3 cut(s)	47, 150, 359
Bse1I	ACTGG	1 cut(s)	376
BseDI	CCNNGG	4 cut(s)	18, 458, 459, 643
BseGI	GGATG	1 cut(s)	615
BseLI	CCNNNNNNNGG	3 cut(s)	138, 622, 644
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	5 cut(s)	121, 182, 260, 553, 556
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	2 cut(s)	150, 359
BsiHKCI	CYCGRG	2 cut(s)	458, 637
BsiSI	CCGG	4 cut(s)	48, 151, 360, 459
BslFI	GGGAC	3 cut(s)	156, 275, 639
BslI	CCNNNNNNNGG	3 cut(s)	138, 622, 644
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	3 cut(s)	156, 275, 639
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	2 cut(s)	458, 637
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	353, 450
BspACI	CCGC	4 cut(s)	9, 221, 259, 616
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	5 cut(s)	60, 170, 364, 373, 652
BspPI	GGATC	1 cut(s)	361
BsrFI	RCCGGY	3 cut(s)	47, 150, 359
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	3 cut(s)	47, 150, 359
BssECI	CCNNGG	4 cut(s)	18, 458, 459, 643
BssMI	GATC	2 cut(s)	353, 450
BssT1I	CCWWGG	2 cut(s)	18, 643
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstC8I	GCNNGC	1 cut(s)	49
BstF5I	GGATG	1 cut(s)	615
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	2 cut(s)	356, 453
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	353, 450
BstMWI	GCNNNNNNNGC	2 cut(s)	610, 648
BstSCI	CCNGG	2 cut(s)	457, 458
BstUI	CGCG	1 cut(s)	11
BstV2I	GAAGAC	2 cut(s)	38, 444
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	615
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	1 cut(s)	49
CfoI	GCGC	1 cut(s)	327
Cfr10I	RCCGGY	3 cut(s)	47, 150, 359
Cfr9I	CCCGGG	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	559
CspAI	ACCGGT	2 cut(s)	150, 359
CviAII	CATG	2 cut(s)	164, 605
CviQI	GTAC	1 cut(s)	559
DpnI	GATC	2 cut(s)	355, 452
DpnII	GATC	2 cut(s)	353, 450
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	210
Eco130I	CCWWGG	2 cut(s)	18, 643
Eco24I	GRGCYC	1 cut(s)	171
Eco47III	AGCGCT	1 cut(s)	326
Eco88I	CYCGRG	2 cut(s)	458, 637
EcoRI	GAATTC	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	18, 643
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	2 cut(s)	18, 643
FaeI	CATG	2 cut(s)	167, 608
FaiI	YATR	9 cut(s)	123, 165, 184, 496, 498, 578, 606, 665, 684
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FaqI	GGGAC	3 cut(s)	156, 275, 639
FatI	CATG	2 cut(s)	163, 604
FauI	CCCGC	1 cut(s)	252
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	1 cut(s)	450
FokI	GGATG	1 cut(s)	622
FriOI	GRGCYC	1 cut(s)	171
FspBI	CTAG	3 cut(s)	434, 644, 703
GlaI	GCGC	1 cut(s)	326
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	48, 151, 360, 459
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	167, 608
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	5 cut(s)	23, 38, 144, 395, 471
HpaII	CCGG	4 cut(s)	48, 151, 360, 459
HphI	GGTGA	2 cut(s)	601, 679
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	4 cut(s)	30, 43, 523, 634
Hpy188III	TCNNGA	3 cut(s)	292, 319, 434
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	96, 212, 664
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	2 cut(s)	159, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	610, 648
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	167, 608
HspAI	GCGC	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	450
Kzo9I	GATC	2 cut(s)	353, 450
LmnI	GCTCC	5 cut(s)	58, 174, 204, 618, 656
LpnPI	CCDG	6 cut(s)	61, 164, 373, 389, 459, 472
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	3 cut(s)	434, 644, 703
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	693
MalI	GATC	2 cut(s)	355, 452
MboI	GATC	2 cut(s)	353, 450
MboII	GAAGA	5 cut(s)	43, 286, 289, 449, 668
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	171
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	254, 280
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	32, 138, 480
MmeI	TCCRAC	3 cut(s)	331, 333, 657
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	405, 414
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	48, 151, 360, 459
MspR9I	CCNGG	2 cut(s)	459, 460
Mva1269I	GAATGC	1 cut(s)	159
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	610, 648
NaeI	GCCGGC	1 cut(s)	49
NciI	CCSGG	2 cut(s)	459, 460
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	2 cut(s)	353, 450
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	2 cut(s)	167, 608
NlaIV	GGNNCC	5 cut(s)	60, 170, 364, 373, 652
PctI	GAATGC	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	23, 395
PinAI	ACCGGT	2 cut(s)	150, 359
PleI	GAGTC	3 cut(s)	32, 138, 479
PpsI	GAGTC	3 cut(s)	32, 138, 479
PspN4I	GGNNCC	5 cut(s)	60, 170, 364, 373, 652
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	2 cut(s)	405, 414
Sau3AI	GATC	2 cut(s)	353, 450
ScaI	AGTACT	1 cut(s)	560
SchI	GAGTC	3 cut(s)	32, 138, 480
ScrFI	CCNGG	2 cut(s)	459, 460
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	4 cut(s)	267, 308, 483, 489
SfaNI	GCATC	1 cut(s)	600
SgrAI	CRCCGGYG	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	460
Sse9I	AATT	2 cut(s)	254, 280
SsiI	CCGC	4 cut(s)	9, 221, 259, 616
SspMI	CTAG	3 cut(s)	434, 644, 703
StyD4I	CCNGG	2 cut(s)	457, 458
StyI	CCWWGG	2 cut(s)	18, 643
TaiI	ACGT	1 cut(s)	267
TaqII	GACCGA	1 cut(s)	50
TasI	AATT	2 cut(s)	254, 280
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	2 cut(s)	23, 395
Tru1I	TTAA	2 cut(s)	405, 414
Tru9I	TTAA	2 cut(s)	405, 414
TscAI	CASTG	1 cut(s)	625
TspDTI	ATGAA	3 cut(s)	152, 408, 423
TspGWI	ACGGA	1 cut(s)	71
TspMI	CCCGGG	1 cut(s)	458
TspRI	CASTG	1 cut(s)	625
XapI	RAATTY	1 cut(s)	280
XbaI	TCTAGA	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmaI	CCCGGG	1 cut(s)	458
XmaJI	CCTAGG	1 cut(s)	643
XspI	CTAG	3 cut(s)	434, 644, 703
ZrmI	AGTACT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.