Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000159

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

589223 .. 589672

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_159G00432910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGATCCGCTAGTTCTATCGATGAAGGTGGATCTATTGATCTAAACTTTGGTTCCATCCGGTTCTACGGTGTTGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCGGTACTACTTCCTTTGGCACAACGGGAGGACAAACTTTCATGGAACAACAAGGAGGAGATCACCGGGAGGTCGAAACTCTTCCTCTGTTCCCCGTACACGGTGAGAGACGTCCTTGTAACCCAAAGACTACTTCCGAGGAAGGTAGCGCATACGGTTACTATTCGATGGCTCGGGCGGTTACAACGGTGGCTCTCAAGTCTCTCTCGAGCTCGGCCTCAACCCATTCGGAGCCGCCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

149

Amino Acids

15.82

Weight (kDa)

5.22

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	319
AciI	CCGC	3 cut(s)	57, 383, 440
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	7 cut(s)	40, 48, 61, 88, 123, 136, 157
AcoI	YGGCCR	1 cut(s)	160
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	2 cut(s)	211, 303
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	142, 196
AjuI	GAANNNNNNNTTGG	2 cut(s)	322, 354
AluBI	AGCT	1 cut(s)	417
AluI	AGCT	1 cut(s)	417
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	2 cut(s)	307, 411
AlwI	GGATC	7 cut(s)	40, 48, 61, 88, 123, 136, 157
Ama87I	CYCGRG	2 cut(s)	378, 412
AoxI	GGCC	2 cut(s)	160, 420
AsiGI	ACCGGT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	180, 260, 320
AvaI	CYCGRG	2 cut(s)	378, 412
BamHI	GGATCC	2 cut(s)	53, 128
BanII	GRGCYC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	419
BccI	CCATC	3 cut(s)	113, 119, 367
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	307, 411
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
Bme1390I	CCNGG	1 cut(s)	272
BmeT110I	CYCGRG	2 cut(s)	378, 412
BmiI	GGNNCC	4 cut(s)	55, 103, 130, 438
BmrFI	CCNGG	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	272
Bsa29I	ATCGAT	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	342
BsaWI	WCCGGW	2 cut(s)	108, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	206
BseCI	ATCGAT	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseRI	GAGGAG	2 cut(s)	175, 276
BshFI	GGCC	2 cut(s)	162, 422
BshTI	ACCGGT	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	419
BsiHKCI	CYCGRG	2 cut(s)	378, 412
BsiSI	CCGG	3 cut(s)	109, 207, 271
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	307, 411
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	162, 422
BsoBI	CYCGRG	2 cut(s)	378, 412
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
BspACI	CCGC	3 cut(s)	57, 383, 440
BspANI	GGCC	2 cut(s)	162, 422
BspDI	ATCGAT	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	55, 103, 130, 438
BspPI	GGATC	7 cut(s)	40, 48, 61, 88, 123, 136, 157
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
BssNI	GRCGYC	1 cut(s)	316
Bst4CI	ACNGT	4 cut(s)	119, 308, 362, 394
Bst6I	CTCTTC	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	8 cut(s)	35, 43, 56, 83, 91, 131, 152, 268
BstMAI	GTCTC	2 cut(s)	307, 411
BstMBI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
BstSCI	CCNGG	1 cut(s)	270
BstX2I	RGATCY	4 cut(s)	32, 53, 80, 128
BstYI	RGATCY	4 cut(s)	32, 53, 80, 128
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	162, 422
BsuTUI	ATCGAT	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	69
Csp6I	GTAC	2 cut(s)	210, 302
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	2 cut(s)	153, 247
CviJI	RGCY	6 cut(s)	162, 377, 398, 417, 422, 439
CviKI_1	RGCY	6 cut(s)	162, 377, 398, 417, 422, 439
CviQI	GTAC	2 cut(s)	210, 302
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	8 cut(s)	34, 42, 55, 82, 90, 130, 151, 267
DpnII	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
EaeI	YGGCCR	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	417
Eco24I	GRGCYC	1 cut(s)	419
Eco53kI	GAGCTC	1 cut(s)	417
Eco88I	CYCGRG	2 cut(s)	378, 412
EcoICRI	GAGCTC	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	419
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	2 cut(s)	156, 250
FaiI	YATR	5 cut(s)	154, 165, 178, 248, 358
FatI	CATG	2 cut(s)	152, 246
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	1 cut(s)	60
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	1 cut(s)	440
HaeIII	GGCC	2 cut(s)	162, 422
HapII	CCGG	3 cut(s)	109, 207, 271
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	2 cut(s)	156, 250
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaII	CCGG	3 cut(s)	109, 207, 271
HphI	GGTGA	3 cut(s)	180, 260, 320
Hpy166II	GTNNAC	2 cut(s)	172, 304
Hpy188I	TCNGA	3 cut(s)	15, 343, 436
Hpy188III	TCNNGA	2 cut(s)	38, 412
Hpy8I	GTNNAC	2 cut(s)	172, 304
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	2 cut(s)	68, 341
HpyCH4III	ACNGT	4 cut(s)	119, 308, 362, 394
HpyCH4IV	ACGT	2 cut(s)	18, 316
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	18, 316
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	2 cut(s)	156, 250
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	3 cut(s)	122, 220, 284
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	18, 316
MaeIII	GTNAC	3 cut(s)	323, 362, 385
MalI	GATC	8 cut(s)	34, 42, 55, 82, 90, 130, 151, 267
MboI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	4 cut(s)	32, 53, 80, 128
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	2 cut(s)	9, 142
MnlI	CCTC	8 cut(s)	193, 196, 227, 254, 268, 300, 337, 433
MroXI	GAANNNNTTC	1 cut(s)	285
MspI	CCGG	3 cut(s)	109, 207, 271
MspR9I	CCNGG	1 cut(s)	272
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
NlaIII	CATG	2 cut(s)	156, 250
NlaIV	GGNNCC	4 cut(s)	55, 103, 130, 438
NmeAIII	GCCGAG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	412
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	285
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	18
PspN4I	GGNNCC	4 cut(s)	55, 103, 130, 438
PsuI	RGATCY	4 cut(s)	32, 53, 80, 128
RsaI	GTAC	2 cut(s)	211, 303
RsaNI	GTAC	2 cut(s)	210, 302
SacI	GAGCTC	1 cut(s)	419
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 149, 265
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	419
SetI	ASST	7 cut(s)	21, 79, 193, 279, 319, 352, 419
Sfr274I	CTCGAG	1 cut(s)	412
SlaI	CTCGAG	1 cut(s)	412
SmlI	CTYRAG	2 cut(s)	401, 412
SmoI	CTYRAG	2 cut(s)	401, 412
Sse9I	AATT	2 cut(s)	9, 142
SsiI	CCGC	3 cut(s)	57, 383, 440
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	4 cut(s)	119, 308, 362, 394
TaiI	ACGT	2 cut(s)	21, 319
TaqI	TCGA	6 cut(s)	39, 69, 135, 279, 371, 413
TasI	AATT	2 cut(s)	9, 142
TauI	GCSGC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	17, 87, 235
TspGWI	ACGGA	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	60
ZraI	GACGTC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.