Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

31378560 .. 31379009

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGGCATTTCGGAACGTTCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGCATGAAGGTGGATCCATCGATCCGAACTTTGGTCCCACAGTTCCTACGAGTGCCGATGGATCCATCTATCTAGCTTTTGGGTCAAACGTCGACCATCATGTTGACCCAAATTCCACTTCACCCTTCAACAATAACAACAAGTACTACCTCCTTCGGCACAACAGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCGGCGGGAGATCGAAACTCTTCCTTTGCTCCCCGTGCATAAAGAGGACATCCTTGGTAACCCGATGACTACTTCGCAGGAAGGTAGCGCATATGGTTACTATCCCGTGGGCTCGGGCAGTCACAACAATGGCTCTCAAGTCTCTCTTGATTTCACCTCAACCCATCCGGAGCCGCCGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

149

Amino Acids

16.09

Weight (kDa)

5.72

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	433
AciI	CCGC	4 cut(s)	30, 57, 271, 440
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	6 cut(s)	40, 75, 83, 88, 123, 136
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	6 cut(s)	40, 75, 83, 88, 123, 136
Ama87I	CYCGRG	1 cut(s)	379
Aor13HI	TCCGGA	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	178
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	53, 101
AsuHPI	GGTGA	2 cut(s)	180, 412
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	53, 101
BamHI	GGATCC	2 cut(s)	80, 128
BanII	GRGCYC	1 cut(s)	380
BccI	CCATC	5 cut(s)	92, 119, 140, 171, 438
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	440
BlsI	GCNGC	1 cut(s)	441
BmcAI	AGTACT	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	53, 101
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	53, 101
BmiI	GGNNCC	5 cut(s)	55, 82, 103, 130, 438
BpuEI	CTTGAG	1 cut(s)	387
Bsa29I	ATCGAT	1 cut(s)	87
BsaJI	CCNNGG	3 cut(s)	246, 319, 372
BsaWI	WCCGGW	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
BseAI	TCCGGA	1 cut(s)	433
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	3 cut(s)	246, 319, 372
BseGI	GGATG	2 cut(s)	315, 430
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseRI	GAGGAG	2 cut(s)	273, 276
BshVI	ATCGAT	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	434
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp13I	TCCGGA	1 cut(s)	433
Bsp143I	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	4 cut(s)	30, 57, 271, 440
BspDI	ATCGAT	1 cut(s)	87
BspEI	TCCGGA	1 cut(s)	433
BspLI	GGNNCC	5 cut(s)	55, 82, 103, 130, 438
BspPI	GGATC	6 cut(s)	40, 75, 83, 88, 123, 136
BssECI	CCNNGG	3 cut(s)	246, 319, 372
BssMI	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
BssT1I	CCWWGG	2 cut(s)	246, 319
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	2 cut(s)	246, 372
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	315, 430
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	7 cut(s)	35, 43, 83, 91, 131, 268, 279
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstPI	GGTNACC	1 cut(s)	323
BstX2I	RGATCY	3 cut(s)	32, 80, 128
BstYI	RGATCY	3 cut(s)	32, 80, 128
Bsu15I	ATCGAT	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	87
BtgI	CCRYGG	2 cut(s)	246, 372
BtsCI	GGATG	2 cut(s)	315, 430
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	53, 101
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	71, 167, 247
CviJI	RGCY	4 cut(s)	143, 378, 399, 439
CviKI_1	RGCY	4 cut(s)	143, 378, 399, 439
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	7 cut(s)	34, 42, 82, 90, 130, 267, 278
DpnII	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	246, 319
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	53, 101
Eco88I	CYCGRG	1 cut(s)	379
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	246, 319
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	2 cut(s)	246, 319
FaeI	CATG	3 cut(s)	74, 170, 250
FaiI	YATR	6 cut(s)	72, 168, 248, 306, 358, 360
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	3 cut(s)	70, 166, 246
FauI	CCCGC	2 cut(s)	64, 264
FauNDI	CATATG	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	440
FokI	GGATG	2 cut(s)	302, 417
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	440
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	1 cut(s)	440
HapII	CCGG	1 cut(s)	434
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	3 cut(s)	74, 170, 250
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	2 cut(s)	160, 172
HindII	GTYRAC	2 cut(s)	160, 172
HpaII	CCGG	1 cut(s)	434
HphI	GGTGA	2 cut(s)	180, 412
Hpy166II	GTNNAC	2 cut(s)	160, 172
Hpy188I	TCNGA	2 cut(s)	15, 93
Hpy188III	TCNNGA	3 cut(s)	38, 413, 434
Hpy8I	GTNNAC	2 cut(s)	160, 172
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	68, 202, 230, 252, 341
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	18, 156
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	2 cut(s)	18, 156
Hsp92II	CATG	3 cut(s)	74, 170, 250
HspAI	GCGC	1 cut(s)	354
Kpn2I	TCCGGA	1 cut(s)	433
Kzo9I	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
LmnI	GCTCC	2 cut(s)	300, 436
LpnPI	CCDG	1 cut(s)	329
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	18, 156
MaeIII	GTNAC	3 cut(s)	323, 362, 386
MalI	GATC	7 cut(s)	34, 42, 82, 90, 130, 267, 278
MboI	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	3 cut(s)	32, 80, 128
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	6 cut(s)	227, 227, 251, 254, 304, 433
MroI	TCCGGA	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	75, 393
MspI	CCGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
NlaIII	CATG	3 cut(s)	74, 170, 250
NlaIV	GGNNCC	5 cut(s)	55, 82, 103, 130, 438
NmuCI	GTSAC	1 cut(s)	386
PdmI	GAANNNNTTC	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	441
Psp1406I	AACGTT	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	5 cut(s)	55, 82, 103, 130, 438
PspPI	GGNCC	2 cut(s)	53, 101
PsuI	RGATCY	3 cut(s)	32, 80, 128
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	75, 393
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	440
Sau3AI	GATC	7 cut(s)	32, 40, 80, 88, 128, 265, 276
Sau96I	GGNCC	2 cut(s)	53, 101
ScaI	AGTACT	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	8 cut(s)	21, 79, 145, 159, 219, 244, 352, 425
SinI	GGWCC	2 cut(s)	53, 101
SmiMI	CAYNNNNRTG	2 cut(s)	75, 393
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	4 cut(s)	30, 57, 271, 440
SspMI	CTAG	1 cut(s)	140
StyI	CCWWGG	2 cut(s)	246, 319
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	21, 159
TaqI	TCGA	4 cut(s)	39, 87, 159, 279
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	442
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	2 cut(s)	17, 87
VpaK11BI	GGWCC	2 cut(s)	53, 101
XapI	RAATTY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.