Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000180

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

340000 .. 340551

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_180G00433390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGAACCACGAACTCTGCAACTATTGGAGCTTCAAACCCAGCAACAAATGGAATTACGGGCCCAGCAACCAGCCGAGGAGGGCGGAAGCAACCAAGCGGCCGGAAGTAGTGCTAATACGCATGTCGTGCGACCTAATACCCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCGAGGGCCTTTACTATGATAAGGGTTTTAAGCATCTAAATCCGGAGCAGATTCAAGAGATCCGCCTCAATGCGAAGCGTATGGGCGGATCGAGGACAAGAACGTCTTCTTTTGGTTCCCGAACCTCAAATCTCGAGAGAGCCGCAGATGAAGGCAATTCGGAACTTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTTGTTCTGCGATGAAGGTGGATCCATTGGTCTAAACTTTGGTTCCATTAATTCCACTAGTGTTGATGGATCTATCGATCTAGCTTTTGGGTCAAGTGTCGACTATCATGTTGACCCATATTCCTCTTTAGCCTTCAACAATAACAACGAGTACTACCTCATTCGGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

183

Amino Acids

20.5

Weight (kDa)

5.64

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	550
AasI	GACNNNNNNGTC	1 cut(s)	277
AbsI	CCTCGAGG	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	7 cut(s)	84, 98, 158, 238, 261, 318, 379
AclWI	GGATC	6 cut(s)	229, 271, 362, 396, 409, 457
AcoI	YGGCCR	1 cut(s)	99
AfaI	GTAC	1 cut(s)	533
AgsI	TTSAA	3 cut(s)	35, 230, 517
AhlI	ACTAGT	1 cut(s)	437
AluBI	AGCT	2 cut(s)	31, 464
AluI	AGCT	2 cut(s)	31, 464
AlwI	GGATC	6 cut(s)	229, 271, 362, 396, 409, 457
Ama87I	CYCGRG	2 cut(s)	176, 308
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	3 cut(s)	60, 99, 181
ApaI	GGGCCC	1 cut(s)	64
AseI	ATTAAT	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	280
AspS9I	GGNCC	4 cut(s)	60, 61, 181, 375
AsuC2I	CCSGG	1 cut(s)	142
AvaI	CYCGRG	2 cut(s)	176, 308
AvaII	GGWCC	1 cut(s)	375
BaeGI	GKGCMC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	273
BccI	CCATC	1 cut(s)	440
BcnI	CCSGG	1 cut(s)	142
BcuI	ACTAGT	1 cut(s)	437
BfaI	CTAG	2 cut(s)	438, 461
BisI	GCNGC	2 cut(s)	99, 318
BlsI	GCNGC	2 cut(s)	100, 319
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	142
Bme18I	GGWCC	1 cut(s)	375
BmeT110I	CYCGRG	2 cut(s)	176, 308
BmgT120I	GGNCC	4 cut(s)	60, 61, 181, 375
BmiI	GGNNCC	6 cut(s)	6, 62, 292, 377, 403, 424
BmrFI	CCNGG	1 cut(s)	142
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	142
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	217
BseAI	TCCGGA	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	64
BseX3I	CGGCCG	1 cut(s)	99
BseYI	CCCAGC	2 cut(s)	39, 63
Bsh1285I	CGRYCG	1 cut(s)	102
BshFI	GGCC	3 cut(s)	62, 101, 183
BshVI	ATCGAT	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	102
BsiHKCI	CYCGRG	2 cut(s)	176, 308
BsiSI	CCGG	3 cut(s)	102, 142, 218
BsnI	GGCC	3 cut(s)	62, 101, 183
BsoBI	CYCGRG	2 cut(s)	176, 308
Bsp120I	GGGCCC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
BspACI	CCGC	7 cut(s)	84, 98, 158, 238, 261, 318, 379
BspANI	GGCC	3 cut(s)	62, 101, 183
BspDI	ATCGAT	1 cut(s)	456
BspEI	TCCGGA	1 cut(s)	217
BspLI	GGNNCC	6 cut(s)	6, 62, 292, 377, 403, 424
BspPI	GGATC	6 cut(s)	229, 271, 362, 396, 409, 457
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	7 cut(s)	237, 266, 357, 365, 404, 452, 460
BstMBI	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
BstMCI	CGRYCG	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 387
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	273
BstX2I	RGATCY	4 cut(s)	234, 354, 401, 449
BstYI	RGATCY	4 cut(s)	234, 354, 401, 449
BstZI	CGGCCG	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	3 cut(s)	62, 101, 183
BsuTUI	ATCGAT	1 cut(s)	456
BtgZI	GCGATG	1 cut(s)	405
Cfr13I	GGNCC	4 cut(s)	60, 61, 181, 375
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	532
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	2 cut(s)	122, 488
CviJI	RGCY	8 cut(s)	31, 62, 74, 101, 183, 317, 464, 512
CviKI_1	RGCY	8 cut(s)	31, 62, 74, 101, 183, 317, 464, 512
CviQI	GTAC	1 cut(s)	532
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	7 cut(s)	236, 265, 356, 364, 403, 451, 459
DpnII	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
EaeI	YGGCCR	1 cut(s)	99
EagI	CGGCCG	1 cut(s)	99
EciI	GGCGGA	3 cut(s)	99, 227, 276
EclXI	CGGCCG	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	99
Eco88I	CYCGRG	2 cut(s)	176, 308
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	2 cut(s)	125, 491
FaiI	YATR	6 cut(s)	123, 192, 257, 489, 499, 550
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FatI	CATG	2 cut(s)	121, 487
FauI	CCCGC	1 cut(s)	386
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	2 cut(s)	99, 318
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	99, 318
FspBI	CTAG	2 cut(s)	438, 461
GluI	GCNGC	2 cut(s)	99, 318
GsaI	CCCAGC	2 cut(s)	43, 67
HaeIII	GGCC	3 cut(s)	62, 101, 183
HapII	CCGG	3 cut(s)	102, 142, 218
Hin1II	CATG	2 cut(s)	125, 491
HincII	GTYRAC	2 cut(s)	481, 493
HindII	GTYRAC	2 cut(s)	481, 493
HinfI	GANTC	3 cut(s)	148, 171, 226
HpaII	CCGG	3 cut(s)	102, 142, 218
Hpy166II	GTNNAC	3 cut(s)	147, 481, 493
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	6 cut(s)	218, 230, 294, 308, 310, 360
Hpy8I	GTNNAC	3 cut(s)	147, 481, 493
HpyAV	CCTTC	3 cut(s)	320, 389, 523
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 387
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	125, 491
Kpn2I	TCCGGA	1 cut(s)	217
Kzo9I	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
LmnI	GCTCC	2 cut(s)	28, 220
LpnPI	CCDG	6 cut(s)	53, 77, 84, 115, 155, 231
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	438, 461
MaeII	ACGT	1 cut(s)	278
MalI	GATC	7 cut(s)	236, 265, 356, 364, 403, 451, 459
MboI	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
MboII	GAAGA	1 cut(s)	273
MflI	RGATCY	4 cut(s)	234, 354, 401, 449
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	3 cut(s)	53, 331, 430
MlyI	GAGTC	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	280
MseI	TTAA	2 cut(s)	204, 429
MspI	CCGG	3 cut(s)	102, 142, 218
MspR9I	CCNGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	2 cut(s)	127, 387
NciI	CCSGG	1 cut(s)	142
NdeII	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
NlaIII	CATG	2 cut(s)	125, 491
NlaIV	GGNNCC	6 cut(s)	6, 62, 292, 377, 403, 424
NmeAIII	GCCGAG	1 cut(s)	100
NspI	RCATGY	1 cut(s)	125
PaeR7I	CTCGAG	2 cut(s)	176, 308
PdmI	GAANNNNTTC	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	171, 226
PkrI	GCNGC	2 cut(s)	100, 319
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	429
PsiI	TTATAA	1 cut(s)	550
PspFI	CCCAGC	2 cut(s)	39, 63
PspN4I	GGNNCC	6 cut(s)	6, 62, 292, 377, 403, 424
PspOMI	GGGCCC	1 cut(s)	60
PspPI	GGNCC	4 cut(s)	60, 61, 181, 375
PspXI	VCTCGAGB	1 cut(s)	176
PsuI	RGATCY	4 cut(s)	234, 354, 401, 449
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SalI	GTCGAC	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	204, 429
SatI	GCNGC	2 cut(s)	99, 318
Sau3AI	GATC	7 cut(s)	234, 263, 354, 362, 401, 449, 457
Sau96I	GGNCC	4 cut(s)	60, 61, 181, 375
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	7 cut(s)	33, 136, 281, 302, 400, 466, 540
SfaNI	GCATC	1 cut(s)	217
Sfr274I	CTCGAG	2 cut(s)	176, 308
SinI	GGWCC	1 cut(s)	375
SlaI	CTCGAG	2 cut(s)	176, 308
SmlI	CTYRAG	2 cut(s)	176, 308
SmoI	CTYRAG	2 cut(s)	176, 308
SpeI	ACTAGT	1 cut(s)	437
Sse9I	AATT	3 cut(s)	53, 331, 430
SsiI	CCGC	7 cut(s)	84, 98, 158, 238, 261, 318, 379
SspMI	CTAG	2 cut(s)	438, 461
StyD4I	CCNGG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	6 cut(s)	177, 266, 309, 361, 456, 480
TasI	AATT	3 cut(s)	53, 331, 430
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	2 cut(s)	101, 320
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	2 cut(s)	204, 429
Tru9I	TTAA	2 cut(s)	204, 429
TspDTI	ATGAA	2 cut(s)	339, 408
VpaK11BI	GGWCC	1 cut(s)	375
VspI	ATTAAT	1 cut(s)	429
XceI	RCATGY	1 cut(s)	125
XhoI	CTCGAG	2 cut(s)	176, 308
XmiI	GTMKAC	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	280
XspI	CTAG	2 cut(s)	438, 461
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.