Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

7780878 .. 7781204

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAACAACAAACTCTTCAACTATTGGAGCTTTCGACCCAACAACAAATGGAATTTCAAGCCCAGCAACCAACCCGGGGAGGAGGAAGCAACCAATCGGCCGGCGGTAGTGCCAATGCACTCGTCGAGCGACTCGGTACCCGATGGACTCCCACACCGCCTCGCCTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCGGGAGATCTGCCTCGGCCGGCCGGTTTGGGCCGATCGAGGACAAAAACGTGTTCTTCGGTTCCGGAACCTCTCAAGTCCCGAGAGAGCCGACGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

108

Amino Acids

12.25

Weight (kDa)

10.52

Isoelectric Point (pI)

59.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	2 cut(s)	105, 158
AcoI	YGGCCR	3 cut(s)	99, 244, 248
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	2 cut(s)	20, 59
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Ama87I	CYCGRG	3 cut(s)	75, 218, 308
Aor13HI	TCCGGA	1 cut(s)	291
AoxI	GGCC	5 cut(s)	99, 181, 244, 248, 258
ApoI	RAATTY	1 cut(s)	53
Asp718I	GGTACC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	181, 258
AsuC2I	CCSGG	2 cut(s)	76, 77
AvaI	CYCGRG	3 cut(s)	75, 218, 308
BanI	GGYRCC	1 cut(s)	137
BccI	CCATC	1 cut(s)	138
BcnI	CCSGG	2 cut(s)	76, 77
BglII	AGATCT	1 cut(s)	234
Bme1390I	CCNGG	2 cut(s)	76, 77
BmeT110I	CYCGRG	3 cut(s)	75, 218, 308
BmgT120I	GGNCC	2 cut(s)	181, 258
BmiI	GGNNCC	3 cut(s)	139, 290, 296
BmrFI	CCNGG	2 cut(s)	76, 77
BpuEI	CTTGAG	2 cut(s)	161, 286
BpuMI	CCSGG	2 cut(s)	76, 77
BsaJI	CCNNGG	3 cut(s)	75, 76, 241
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse118I	RCCGGY	3 cut(s)	101, 246, 250
BseAI	TCCGGA	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	75, 76, 241
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	96
BseX3I	CGGCCG	3 cut(s)	99, 244, 248
BseYI	CCCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	4 cut(s)	102, 247, 251, 265
BshFI	GGCC	5 cut(s)	101, 183, 246, 250, 260
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	4 cut(s)	102, 247, 251, 265
BsiHKCI	CYCGRG	3 cut(s)	75, 218, 308
BsiSI	CCGG	5 cut(s)	76, 102, 247, 251, 292
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	5 cut(s)	101, 183, 246, 250, 260
BsoBI	CYCGRG	3 cut(s)	75, 218, 308
Bsp13I	TCCGGA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	234, 262
BspACI	CCGC	2 cut(s)	105, 158
BspANI	GGCC	5 cut(s)	101, 183, 246, 250, 260
BspEI	TCCGGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	139, 290, 296
BspT107I	GGYRCC	1 cut(s)	137
BsrFI	RCCGGY	3 cut(s)	101, 246, 250
BssAI	RCCGGY	3 cut(s)	101, 246, 250
BssECI	CCNNGG	3 cut(s)	75, 76, 241
BssMI	GATC	2 cut(s)	234, 262
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	103, 248
BstDEI	CTNAG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	237, 265
BstMBI	GATC	2 cut(s)	234, 262
BstMCI	CGRYCG	4 cut(s)	102, 247, 251, 265
BstSCI	CCNGG	2 cut(s)	74, 75
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BstZI	CGGCCG	3 cut(s)	99, 244, 248
BsuRI	GGCC	5 cut(s)	101, 183, 246, 250, 260
Cac8I	GCNNGC	2 cut(s)	103, 248
Cfr10I	RCCGGY	3 cut(s)	101, 246, 250
Cfr13I	GGNCC	2 cut(s)	181, 258
Cfr9I	CCCGGG	1 cut(s)	75
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	138
CviJI	RGCY	9 cut(s)	31, 62, 101, 183, 201, 246, 250, 260, 317
CviKI_1	RGCY	9 cut(s)	31, 62, 101, 183, 201, 246, 250, 260, 317
CviQI	GTAC	1 cut(s)	138
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	236, 264
DpnII	GATC	2 cut(s)	234, 262
EaeI	YGGCCR	3 cut(s)	99, 244, 248
EagI	CGGCCG	3 cut(s)	99, 244, 248
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EclXI	CGGCCG	3 cut(s)	99, 244, 248
Eco52I	CGGCCG	3 cut(s)	99, 244, 248
Eco88I	CYCGRG	3 cut(s)	75, 218, 308
EcoO109I	RGGNCCY	1 cut(s)	181
FaiI	YATR	1 cut(s)	192
FaqI	GGGAC	1 cut(s)	291
FseI	GGCCGGCC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	5 cut(s)	101, 183, 246, 250, 260
HapII	CCGG	5 cut(s)	76, 102, 247, 251, 292
HgaI	GACGC	1 cut(s)	197
HinfI	GANTC	4 cut(s)	132, 148, 171, 226
HpaII	CCGG	5 cut(s)	76, 102, 247, 251, 292
Hpy188III	TCNNGA	4 cut(s)	218, 230, 292, 308
Hpy99I	CGWCG	2 cut(s)	128, 323
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	277
Kpn2I	TCCGGA	1 cut(s)	291
KpnI	GGTACC	1 cut(s)	141
KroI	GCCGGC	2 cut(s)	101, 246
KroNI	GCCGGC	2 cut(s)	103, 248
Kzo9I	GATC	2 cut(s)	234, 262
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	77, 89, 115, 260, 264, 305
MaeII	ACGT	1 cut(s)	277
MalI	GATC	2 cut(s)	236, 264
MboI	GATC	2 cut(s)	234, 262
MboII	GAAGA	2 cut(s)	8, 275
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	126, 142
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	7 cut(s)	74, 77, 171, 185, 251, 260, 308
MroI	TCCGGA	1 cut(s)	291
MroNI	GCCGGC	2 cut(s)	101, 246
MseI	TTAA	1 cut(s)	204
MspI	CCGG	5 cut(s)	76, 102, 247, 251, 292
MspR9I	CCNGG	2 cut(s)	76, 77
NaeI	GCCGGC	2 cut(s)	103, 248
NciI	CCSGG	2 cut(s)	76, 77
NdeII	GATC	2 cut(s)	234, 262
NgoMIV	GCCGGC	2 cut(s)	101, 246
NlaIV	GGNNCC	3 cut(s)	139, 290, 296
NmeAIII	GCCGAG	1 cut(s)	222
PdiI	GCCGGC	2 cut(s)	103, 248
PfeI	GAWTC	2 cut(s)	171, 226
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	2 cut(s)	126, 142
PpsI	GAGTC	2 cut(s)	126, 142
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	139, 290, 296
PspPI	GGNCC	2 cut(s)	181, 258
PsuI	RGATCY	1 cut(s)	234
PvuI	CGATCG	1 cut(s)	265
RigI	GGCCGGCC	1 cut(s)	250
RsaI	GTAC	1 cut(s)	139
RsaNI	GTAC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	234, 262
Sau96I	GGNCC	2 cut(s)	181, 258
SchI	GAGTC	2 cut(s)	126, 142
ScrFI	CCNGG	2 cut(s)	76, 77
SetI	ASST	3 cut(s)	33, 280, 300
SmaI	CCCGGG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	176, 301
SmoI	CTYRAG	2 cut(s)	176, 301
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	105, 158
StyD4I	CCNGG	2 cut(s)	74, 75
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	35, 126, 265
TasI	AATT	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	171, 226
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TspMI	CCCGGG	1 cut(s)	75
XapI	RAATTY	1 cut(s)	53
XmaI	CCCGGG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.