Rroxscaffold_5G00345300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000483
Physical Location & Seq
Forward (+)
15688809 .. 15689258
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345300.1

Sequence Viewer

Length: 450 bp
ATGAAGGCAATTCGGAATGTTCGAGTTGGTGGATCTCTCGATCTCAATTTTGGATCCACTAGTTCTACCGATGATGGTGGATCCATCGATCTAAACTTTGGTTCCATTAGTTCCACCGGTGCCGATGGATCTATCGATCTAACATTTGGGTCAAGTGTCGACTATAATGTTGACCCATATTCCTCTTCACCCTTCAACAATAATATCGGTGCTACCTCCTTCGGCACAACAGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCGGCAGGAGATCGAAACTCTTCCTCTGTTCCCCATGCACAGTGAGGACGTCCTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCGCATACGGTTACTATTCCGGTGGCTCGGGCAGTTACAACAGTGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATTCGGAGCCGCCGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.76

Weight (kDa)

6.07

Isoelectric Point (pI)

46.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 317
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 159
AciI CCGC 1 cut(s) 440
AclWI GGATC 6 cut(s) 40, 48, 61, 75, 88, 136
AcyI GRCGYC 1 cut(s) 314
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 1 cut(s) 196
AhlI ACTAGT 1 cut(s) 59
AluBI AGCT 1 cut(s) 417
AluI AGCT 1 cut(s) 417
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 6 cut(s) 40, 48, 61, 75, 88, 136
Ama87I CYCGRG 1 cut(s) 378
AoxI GGCC 1 cut(s) 420
AsiGI ACCGGT 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 355
AsuHPI GGTGA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 378
BamHI GGATCC 2 cut(s) 53, 80
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 419
BccI CCATC 3 cut(s) 68, 92, 119
BcoDI GTCTC 1 cut(s) 411
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 378
BmiI GGNNCC 5 cut(s) 55, 82, 103, 121, 438
BpiI GAAGAC 1 cut(s) 337
BpuEI CTTGAG 2 cut(s) 386, 433
Bsa29I ATCGAT 2 cut(s) 87, 135
BsaHI GRCGYC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 318, 341
BsaWI WCCGGW 2 cut(s) 116, 370
Bse118I RCCGGY 1 cut(s) 116
BseCI ATCGAT 2 cut(s) 87, 135
BseDI CCNNGG 2 cut(s) 318, 341
BseRI GAGGAG 2 cut(s) 272, 275
BshFI GGCC 1 cut(s) 422
BshNI GGYRCC 1 cut(s) 119
BshTI ACCGGT 1 cut(s) 116
BshVI ATCGAT 2 cut(s) 87, 135
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 2 cut(s) 117, 371
BsmAI GTCTC 1 cut(s) 411
BsnI GGCC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
BspACI CCGC 1 cut(s) 440
BspANI GGCC 1 cut(s) 422
BspDI ATCGAT 2 cut(s) 87, 135
BspLI GGNNCC 5 cut(s) 55, 82, 103, 121, 438
BspPI GGATC 6 cut(s) 40, 48, 61, 75, 88, 136
BspT107I GGYRCC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 318, 341
BssMI GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
BssNI GRCGYC 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 307, 361, 394
Bst6I CTCTTC 2 cut(s) 190, 290
BstACI GRCGYC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 447
BstEII GGTNACC 1 cut(s) 322
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 9 cut(s) 35, 43, 56, 83, 91, 131, 139, 267, 278
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
BstPI GGTNACC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 4 cut(s) 32, 53, 80, 128
BstYI RGATCY 4 cut(s) 32, 53, 80, 128
Bsu15I ATCGAT 2 cut(s) 87, 135
BsuRI GGCC 1 cut(s) 422
BsuTUI ATCGAT 2 cut(s) 87, 135
BtsIMutI CAGTG 2 cut(s) 312, 399
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 116
ClaI ATCGAT 2 cut(s) 87, 135
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 2 cut(s) 246, 300
CviJI RGCY 5 cut(s) 377, 398, 417, 422, 439
CviKI_1 RGCY 5 cut(s) 377, 398, 417, 422, 439
DdeI CTNAG 1 cut(s) 447
DpnI GATC 9 cut(s) 34, 42, 55, 82, 90, 130, 138, 266, 277
DpnII GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
Eam1104I CTCTTC 2 cut(s) 190, 290
EarI CTCTTC 2 cut(s) 190, 290
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 419
Eco53kI GAGCTC 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 417
EcoO65I GGTNACC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 318
FaeI CATG 2 cut(s) 249, 303
FaiI YATR 5 cut(s) 165, 178, 247, 301, 357
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 2 cut(s) 245, 299
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 440
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 1 cut(s) 60
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 1 cut(s) 422
HapII CCGG 2 cut(s) 117, 371
HhaI GCGC 1 cut(s) 355
Hin1I GRCGYC 1 cut(s) 314
Hin1II CATG 2 cut(s) 249, 303
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HpaII CCGG 2 cut(s) 117, 371
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 160, 172
Hpy188I TCNGA 3 cut(s) 15, 342, 436
Hpy188III TCNNGA 2 cut(s) 38, 412
Hpy8I GTNNAC 2 cut(s) 160, 172
HpyAV CCTTC 3 cut(s) 202, 229, 340
HpyCH4III ACNGT 3 cut(s) 307, 361, 394
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 303
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 1 cut(s) 314
Hsp92II CATG 2 cut(s) 249, 303
HspAI GCGC 1 cut(s) 353
Kzo9I GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 3 cut(s) 130, 256, 384
MaeI CTAG 1 cut(s) 60
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 3 cut(s) 322, 361, 385
MalI GATC 9 cut(s) 34, 42, 55, 82, 90, 130, 138, 266, 277
MboI GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
MboII GAAGA 3 cut(s) 177, 277, 342
MflI RGATCY 4 cut(s) 32, 53, 80, 128
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 2 cut(s) 9, 46
MnlI CCTC 9 cut(s) 193, 226, 226, 250, 253, 299, 303, 336, 433
MroXI GAANNNNTTC 1 cut(s) 284
MspI CCGG 2 cut(s) 117, 371
NdeII GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
NlaIII CATG 2 cut(s) 249, 303
NlaIV GGNNCC 5 cut(s) 55, 82, 103, 121, 438
NmeAIII GCCGAG 1 cut(s) 398
PcsI WCGNNNNNNNCGW 2 cut(s) 19, 440
PdmI GAANNNNTTC 1 cut(s) 284
PinAI ACCGGT 1 cut(s) 116
PkrI GCNGC 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 419
PspEI GGTNACC 1 cut(s) 322
PspN4I GGNNCC 5 cut(s) 55, 82, 103, 121, 438
PsuI RGATCY 4 cut(s) 32, 53, 80, 128
SacI GAGCTC 1 cut(s) 419
SalI GTCGAC 1 cut(s) 158
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 9 cut(s) 32, 40, 53, 80, 88, 128, 136, 264, 275
SduI GDGCHC 1 cut(s) 419
SetI ASST 5 cut(s) 218, 243, 317, 351, 419
SgrAI CRCCGGYG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 401, 412
SmoI CTYRAG 2 cut(s) 401, 412
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 2 cut(s) 9, 46
SsiI CCGC 1 cut(s) 440
SspMI CTAG 1 cut(s) 60
SstI GAGCTC 1 cut(s) 419
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 3 cut(s) 307, 361, 394
TaiI ACGT 1 cut(s) 317
TaqI TCGA 6 cut(s) 22, 39, 87, 135, 159, 278
TasI AATT 2 cut(s) 9, 46
TauI GCSGC 1 cut(s) 442
TscAI CASTG 2 cut(s) 312, 399
TspDTI ATGAA 2 cut(s) 17, 234
TspRI CASTG 2 cut(s) 312, 399
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 60
ZraI GACGTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.