Rroxscaffold_4G00315640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000483
Physical Location & Seq
Forward (+)
40075195 .. 40075659
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315640.1

Sequence Viewer

Length: 465 bp
ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTAGTTCTACCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCCTTAATTCCCTTTGGTCTGATGGATCTATCGATCTAGCTTTTGGGTCAAGTGTCGACTATCATGTTGACCCAAATTCCACTTCACTCTTCAACAATAACATCGTACTACCTCCTTCGGCACAACGGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCGAGAAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCACGGTGAGGACGTCTTTGGTAACCCGAAAACTACTTCCGAGGAAGGTAGCGCATACGGTTACTATTCGGTGGCTCGGGCGGTTACAACAATGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATCCGGAGCCGCCGACTTGGCTTAGTATAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.66

Weight (kDa)

9.15

Isoelectric Point (pI)

53.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 318
AccI GTMKAC 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 3 cut(s) 57, 383, 440
AclI AACGTT 1 cut(s) 18
AclWI GGATC 4 cut(s) 40, 75, 88, 136
AcsI RAATTY 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 2 cut(s) 143, 417
AluI AGCT 2 cut(s) 143, 417
Alw21I GWGCWC 2 cut(s) 306, 419
Alw26I GTCTC 1 cut(s) 411
Alw44I GTGCAC 1 cut(s) 302
AlwI GGATC 4 cut(s) 40, 75, 88, 136
Ama87I CYCGRG 1 cut(s) 378
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 1 cut(s) 420
ApaLI GTGCAC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 419
Bbv12I GWGCWC 2 cut(s) 306, 419
BccI CCATC 2 cut(s) 119, 438
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 2 cut(s) 60, 140
BglI GCCNNNNNGGC 1 cut(s) 448
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 4 cut(s) 55, 82, 103, 438
BpuEI CTTGAG 2 cut(s) 386, 433
Bsa29I ATCGAT 1 cut(s) 135
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 244, 342
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 433
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 244, 342
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 271, 274
BseSI GKGCMC 1 cut(s) 306
BshFI GGCC 1 cut(s) 422
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 306, 419
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 411
BsnI GGCC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 306, 419
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 3 cut(s) 57, 383, 440
BspANI GGCC 1 cut(s) 422
BspDI ATCGAT 1 cut(s) 135
BspEI TCCGGA 1 cut(s) 433
BspLI GGNNCC 4 cut(s) 55, 82, 103, 438
BspPI GGATC 4 cut(s) 40, 75, 88, 136
BssECI CCNNGG 2 cut(s) 244, 342
BssMI GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 244
Bst4CI ACNGT 2 cut(s) 308, 362
Bst6I CTCTTC 2 cut(s) 197, 290
BstACI GRCGYC 1 cut(s) 315
BstDEI CTNAG 1 cut(s) 452
BstDSI CCRYGG 1 cut(s) 244
BstEII GGTNACC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 430
BstHHI GCGC 1 cut(s) 356
BstKTI GATC 8 cut(s) 35, 43, 83, 91, 131, 139, 266, 278
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
BstMWI GCNNNNNNNGC 1 cut(s) 448
BstPI GGTNACC 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 306
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 1 cut(s) 422
BsuTUI ATCGAT 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 430
CfoI GCGC 1 cut(s) 356
Cfr13I GGNCC 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 135
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 167, 245
CviJI RGCY 7 cut(s) 143, 377, 398, 417, 422, 439, 451
CviKI_1 RGCY 7 cut(s) 143, 377, 398, 417, 422, 439, 451
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 452
DpnI GATC 8 cut(s) 34, 42, 82, 90, 130, 138, 265, 277
DpnII GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
Eam1104I CTCTTC 2 cut(s) 197, 290
EarI CTCTTC 2 cut(s) 197, 290
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 417
Eco88I CYCGRG 1 cut(s) 378
Eco91I GGTNACC 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 417
EcoO65I GGTNACC 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 170, 248
FaiI YATR 5 cut(s) 168, 246, 358, 458, 463
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 2 cut(s) 166, 244
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 1 cut(s) 417
FriOI GRGCYC 1 cut(s) 419
Fsp4HI GCNGC 1 cut(s) 440
FspBI CTAG 2 cut(s) 60, 140
GlaI GCGC 1 cut(s) 355
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 1 cut(s) 422
HapII CCGG 1 cut(s) 434
HhaI GCGC 1 cut(s) 356
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 2 cut(s) 170, 248
Hin6I GCGC 1 cut(s) 354
HinP1I GCGC 1 cut(s) 354
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HpaII CCGG 1 cut(s) 434
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 3 cut(s) 160, 172, 304
Hpy188I TCNGA 3 cut(s) 15, 124, 343
Hpy188III TCNNGA 4 cut(s) 38, 267, 412, 434
Hpy8I GTNNAC 3 cut(s) 160, 172, 304
HpyAV CCTTC 5 cut(s) 68, 228, 250, 264, 341
HpyCH4III ACNGT 2 cut(s) 308, 362
HpyCH4IV ACGT 2 cut(s) 18, 315
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 448
HpyF3I CTNAG 1 cut(s) 452
HpySE526I ACGT 2 cut(s) 18, 315
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 2 cut(s) 170, 248
HspAI GCGC 1 cut(s) 354
Kpn2I TCCGGA 1 cut(s) 433
Kzo9I GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 1 cut(s) 447
MaeI CTAG 2 cut(s) 60, 140
MaeII ACGT 2 cut(s) 18, 315
MaeIII GTNAC 3 cut(s) 323, 362, 385
MalI GATC 8 cut(s) 34, 42, 82, 90, 130, 138, 265, 277
MboI GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
MboII GAAGA 2 cut(s) 184, 277
MflI RGATCY 3 cut(s) 32, 80, 128
MhlI GDGCHC 2 cut(s) 306, 419
MluCI AATT 3 cut(s) 9, 109, 178
MnlI CCTC 8 cut(s) 225, 225, 249, 252, 299, 304, 337, 433
MroI TCCGGA 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 448
NcoI CCATGG 1 cut(s) 244
NdeII GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
NlaIII CATG 2 cut(s) 170, 248
NlaIV GGNNCC 4 cut(s) 55, 82, 103, 438
NmeAIII GCCGAG 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 284
PkrI GCNGC 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 323
PspN4I GGNNCC 4 cut(s) 55, 82, 103, 438
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 3 cut(s) 32, 80, 128
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SacI GAGCTC 1 cut(s) 419
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 8 cut(s) 32, 40, 80, 88, 128, 136, 263, 275
Sau96I GGNCC 1 cut(s) 53
SduI GDGCHC 2 cut(s) 306, 419
SetI ASST 8 cut(s) 21, 79, 145, 217, 242, 318, 352, 419
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 401, 412
SmoI CTYRAG 2 cut(s) 401, 412
Sse9I AATT 3 cut(s) 9, 109, 178
SsiI CCGC 3 cut(s) 57, 383, 440
SspMI CTAG 2 cut(s) 60, 140
SstI GAGCTC 1 cut(s) 419
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 2 cut(s) 308, 362
TaiI ACGT 2 cut(s) 21, 318
TaqI TCGA 5 cut(s) 39, 135, 159, 266, 278
TasI AATT 3 cut(s) 9, 109, 178
TauI GCSGC 1 cut(s) 442
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 1 cut(s) 244
VneI GTGCAC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 2 cut(s) 60, 140
ZraI GACGTC 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.