Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

5694632 .. 5695093

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAACCACGAACTCTTCAACTATTGGAGCCTCAAACCCAACAACAAACGGAATTTCAAGCCCAGCAACCAACCGGGGAGGGAGGAAGCAACCAAGCAGCCGGGAGTAGTGCCAATATGCTGTCGAGCAGCTCCCGGTACCGGTGGACTCCCACACCGCCTCAATTAAGGATCCTCGAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCAGATTCGGGAGATCGCCTCGCCTCTGGCGTTTGGGCCGATCGAGGACAAAAACGTCTTCTTTTGGTTCCGAACCTCAAATCCCGAGAGAGCCAACGAGATGAAGGCATTTCGGAACGTGCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATCCGAACTTTGGTCCCACCGTTCCTACAGTGCCGATGGATCCATCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

153

Amino Acids

16.91

Weight (kDa)

5.01

Isoelectric Point (pI)

53.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	46 - 98	2.1e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AbsI	CCTCGAGG	1 cut(s)	176
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	138
AciI	CCGC	4 cut(s)	158, 343, 351, 378
AclWI	GGATC	8 cut(s)	166, 179, 361, 396, 404, 409, 443, 456
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	141, 419
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	20, 59
AloI	GAACNNNNNNTCC	2 cut(s)	286, 318
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
AlwI	GGATC	8 cut(s)	166, 179, 361, 396, 404, 409, 443, 456
Ama87I	CYCGRG	3 cut(s)	176, 218, 305
AoxI	GGCC	2 cut(s)	181, 257
ApeKI	GCWGC	2 cut(s)	98, 129
ApoI	RAATTY	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	141
Asp718I	GGTACC	1 cut(s)	138
AspS9I	GGNCC	4 cut(s)	181, 257, 374, 422
AsuC2I	CCSGG	3 cut(s)	76, 103, 136
AvaI	CYCGRG	3 cut(s)	176, 218, 305
AvaII	GGWCC	2 cut(s)	374, 422
BamHI	GGATCC	3 cut(s)	171, 401, 448
BanI	GGYRCC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	110, 141
BccI	CCATC	3 cut(s)	413, 439, 460
BcnI	CCSGG	3 cut(s)	76, 103, 136
BfaI	CTAG	1 cut(s)	460
BfmI	CTRYAG	1 cut(s)	435
BisI	GCNGC	2 cut(s)	99, 130
BlsI	GCNGC	2 cut(s)	100, 131
Bme1390I	CCNGG	3 cut(s)	76, 103, 136
Bme18I	GGWCC	2 cut(s)	374, 422
BmeT110I	CYCGRG	3 cut(s)	176, 218, 305
BmgT120I	GGNCC	4 cut(s)	181, 257, 374, 422
BmiI	GGNNCC	9 cut(s)	6, 30, 140, 173, 290, 376, 403, 424, 450
BmrFI	CCNGG	3 cut(s)	76, 103, 136
BpiI	GAAGAC	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpuMI	CCSGG	3 cut(s)	76, 103, 136
Bsa29I	ATCGAT	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 419
Bse118I	RCCGGY	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	2 cut(s)	141, 419
BseXI	GCAGC	2 cut(s)	110, 141
BseYI	CCCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	183, 259
BshNI	GGYRCC	1 cut(s)	138
BshTI	ACCGGT	1 cut(s)	141
BshVI	ATCGAT	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	264
BsiHKCI	CYCGRG	3 cut(s)	176, 218, 305
BsiSI	CCGG	4 cut(s)	75, 102, 136, 142
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	2 cut(s)	141, 419
BsmFI	GGGAC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	183, 259
BsoBI	CYCGRG	3 cut(s)	176, 218, 305
Bsp143I	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
BspACI	CCGC	4 cut(s)	158, 343, 351, 378
BspANI	GGCC	2 cut(s)	183, 259
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	9 cut(s)	6, 30, 140, 173, 290, 376, 403, 424, 450
BspPI	GGATC	8 cut(s)	166, 179, 361, 396, 404, 409, 443, 456
BspT107I	GGYRCC	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
Bst4CI	ACNGT	2 cut(s)	430, 439
Bst6I	CTCTTC	1 cut(s)	21
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	8 cut(s)	174, 237, 264, 356, 364, 404, 412, 451
BstMBI	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
BstMCI	CGRYCG	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	74, 101, 134
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	110, 141
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	4 cut(s)	171, 353, 401, 448
BstYI	RGATCY	4 cut(s)	171, 353, 401, 448
Bsu15I	ATCGAT	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	183, 259
BsuTUI	ATCGAT	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	4 cut(s)	181, 257, 374, 422
ClaI	ATCGAT	1 cut(s)	408
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	139
CspAI	ACCGGT	1 cut(s)	141
CviJI	RGCY	8 cut(s)	31, 62, 101, 132, 183, 201, 259, 314
CviKI_1	RGCY	8 cut(s)	31, 62, 101, 132, 183, 201, 259, 314
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	8 cut(s)	173, 236, 263, 355, 363, 403, 411, 450
DpnII	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	374, 422
Eco88I	CYCGRG	3 cut(s)	176, 218, 305
EcoO109I	RGGNCCY	1 cut(s)	181
FaiI	YATR	2 cut(s)	119, 192
FaqI	GGGAC	1 cut(s)	408
FauI	CCCGC	2 cut(s)	336, 385
Fnu4HI	GCNGC	2 cut(s)	99, 130
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	2 cut(s)	99, 130
FspBI	CTAG	1 cut(s)	460
GluI	GCNGC	2 cut(s)	99, 130
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	183, 259
HapII	CCGG	4 cut(s)	75, 102, 136, 142
HgaI	GACGC	1 cut(s)	197
HinfI	GANTC	2 cut(s)	148, 226
HpaII	CCGG	4 cut(s)	75, 102, 136, 142
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	3 cut(s)	293, 336, 414
Hpy188III	TCNNGA	4 cut(s)	218, 230, 305, 359
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	319, 389
HpyCH4III	ACNGT	2 cut(s)	430, 439
HpyCH4IV	ACGT	2 cut(s)	276, 339
HpySE526I	ACGT	2 cut(s)	276, 339
KpnI	GGTACC	1 cut(s)	142
Kzo9I	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
LmnI	GCTCC	2 cut(s)	28, 137
LpnPI	CCDG	6 cut(s)	77, 88, 115, 149, 155, 233
Lsp1109I	GCAGC	2 cut(s)	110, 141
MaeI	CTAG	1 cut(s)	460
MaeII	ACGT	2 cut(s)	276, 339
MalI	GATC	8 cut(s)	173, 236, 263, 355, 363, 403, 411, 450
MboI	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
MboII	GAAGA	2 cut(s)	8, 271
MflI	RGATCY	4 cut(s)	171, 353, 401, 448
MluCI	AATT	2 cut(s)	53, 164
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	236
MseI	TTAA	2 cut(s)	167, 204
MspI	CCGG	4 cut(s)	75, 102, 136, 142
MspR9I	CCNGG	3 cut(s)	76, 103, 136
NciI	CCSGG	3 cut(s)	76, 103, 136
NdeII	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
NlaIV	GGNNCC	9 cut(s)	6, 30, 140, 173, 290, 376, 403, 424, 450
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	226
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	100, 131
Ple19I	CGATCG	1 cut(s)	264
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	9 cut(s)	6, 30, 140, 173, 290, 376, 403, 424, 450
PspPI	GGNCC	4 cut(s)	181, 257, 374, 422
PspXI	VCTCGAGB	1 cut(s)	176
PsuI	RGATCY	4 cut(s)	171, 353, 401, 448
PvuI	CGATCG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	167, 204
SatI	GCNGC	2 cut(s)	99, 130
Sau3AI	GATC	8 cut(s)	171, 234, 261, 353, 361, 401, 409, 448
Sau96I	GGNCC	4 cut(s)	181, 257, 374, 422
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	76, 103, 136
SetI	ASST	5 cut(s)	134, 279, 299, 342, 400
SfcI	CTRYAG	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	2 cut(s)	374, 422
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	53, 164
SsiI	CCGC	4 cut(s)	158, 343, 351, 378
SspMI	CTAG	1 cut(s)	460
StyD4I	CCNGG	3 cut(s)	74, 101, 134
TaaI	ACNGT	2 cut(s)	430, 439
TaiI	ACGT	2 cut(s)	279, 342
TaqI	TCGA	5 cut(s)	125, 177, 264, 360, 408
TasI	AATT	2 cut(s)	53, 164
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	167, 204
Tru9I	TTAA	2 cut(s)	167, 204
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	2 cut(s)	98, 129
TspDTI	ATGAA	2 cut(s)	338, 408
TspGWI	ACGGA	2 cut(s)	65, 404
TspRI	CASTG	1 cut(s)	444
VpaK11BI	GGWCC	2 cut(s)	374, 422
XapI	RAATTY	1 cut(s)	53
XhoI	CTCGAG	1 cut(s)	176
XspI	CTAG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.