Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

2786041 .. 2786499

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGAACCACGAACTCGCAACTATTGGAGCTTCAAACCCGGCAACGAGAGGATTTCAAGCCCGGAACCAACCGAGGAGGGAGGAAGCAACCAAGCAGGCGGGAGTAGTGCCAATATGCCCGTCGGGCGACCAACCACTCGGTGGGCTCCCACACCGCCACAACTAAGAATCCTCAAGAGCCTTTACTATGATAAGGGTTTTAAGCGTCCAACTCCCGAGCGATTCAAGAGATCGGCCTCAATACGAGCGGTTTGGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCCCGAGAAAGCCAACGGATGAAGGCATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAATTTTGGACCCGCAAGTTCTACAAAGGAAGGTGGATCCATTGATCCGAACTTTGGTCCCACTGTTCCTACGGTGCCGATGGATCCATCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

152

Amino Acids

16.86

Weight (kDa)

10.53

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccBSI	CCGCTC	1 cut(s)	248
AciI	CCGC	4 cut(s)	99, 155, 248, 375
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	6 cut(s)	358, 393, 401, 406, 440, 453
AdeI	CACNNNGTG	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	141, 416
AgsI	TTSAA	3 cut(s)	34, 57, 226
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
AlwI	GGATC	6 cut(s)	358, 393, 401, 406, 440, 453
Ama87I	CYCGRG	2 cut(s)	215, 303
AoxI	GGCC	2 cut(s)	234, 255
Asp700I	GAANNNNTTC	1 cut(s)	276
AspS9I	GGNCC	3 cut(s)	255, 371, 419
AsuC2I	CCSGG	2 cut(s)	39, 62
AvaI	CYCGRG	2 cut(s)	215, 303
AvaII	GGWCC	2 cut(s)	371, 419
BamHI	GGATCC	2 cut(s)	398, 445
BanI	GGYRCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	269
BccI	CCATC	2 cut(s)	436, 457
BcnI	CCSGG	2 cut(s)	39, 62
BfaI	CTAG	1 cut(s)	457
BglI	GCCNNNNNGGC	1 cut(s)	124
Bme1390I	CCNGG	2 cut(s)	39, 62
Bme18I	GGWCC	2 cut(s)	371, 419
BmeT110I	CYCGRG	2 cut(s)	215, 303
BmgT120I	GGNCC	3 cut(s)	255, 371, 419
BmiI	GGNNCC	9 cut(s)	6, 66, 147, 288, 373, 400, 421, 438, 447
BmrFI	CCNGG	2 cut(s)	39, 62
BpiI	GAAGAC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	39, 62
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 416
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	2 cut(s)	141, 416
BseRI	GAGGAG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	236, 257
BshNI	GGYRCC	1 cut(s)	436
BsiEI	CGRYCG	1 cut(s)	262
BsiHKCI	CYCGRG	2 cut(s)	215, 303
BsiSI	CCGG	2 cut(s)	39, 62
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	2 cut(s)	141, 416
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	236, 257
BsoBI	CYCGRG	2 cut(s)	215, 303
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
BspACI	CCGC	4 cut(s)	99, 155, 248, 375
BspANI	GGCC	2 cut(s)	236, 257
BspLI	GGNNCC	9 cut(s)	6, 66, 147, 288, 373, 400, 421, 438, 447
BspPI	GGATC	6 cut(s)	358, 393, 401, 406, 440, 453
BspT107I	GGYRCC	1 cut(s)	436
BsrBI	CCGCTC	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
Bst4CI	ACNGT	2 cut(s)	427, 436
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	7 cut(s)	233, 262, 353, 361, 401, 409, 448
BstMBI	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 254
BstSCI	CCNGG	2 cut(s)	37, 60
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	3 cut(s)	350, 398, 445
BstYI	RGATCY	3 cut(s)	350, 398, 445
BsuRI	GGCC	2 cut(s)	236, 257
BtsCI	GGATG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	97
Cfr13I	GGNCC	3 cut(s)	255, 371, 419
CseI	GACGC	1 cut(s)	194
CviJI	RGCY	7 cut(s)	30, 60, 146, 180, 236, 257, 312
CviKI_1	RGCY	7 cut(s)	30, 60, 146, 180, 236, 257, 312
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	7 cut(s)	232, 261, 352, 360, 400, 408, 447
DpnII	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
DraIII	CACNNNGTG	1 cut(s)	141
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	371, 419
Eco88I	CYCGRG	2 cut(s)	215, 303
EcoT38I	GRGCYC	1 cut(s)	148
FaiI	YATR	2 cut(s)	116, 189
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	405
FauI	CCCGC	2 cut(s)	92, 382
FokI	GGATG	1 cut(s)	331
FriOI	GRGCYC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	457
HaeIII	GGCC	2 cut(s)	236, 257
HapII	CCGG	2 cut(s)	39, 62
HgaI	GACGC	1 cut(s)	194
HinfI	GANTC	2 cut(s)	168, 222
HpaII	CCGG	2 cut(s)	39, 62
Hpy188I	TCNGA	3 cut(s)	291, 333, 411
Hpy188III	TCNNGA	5 cut(s)	175, 215, 226, 303, 356
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	316, 386
HpyCH4III	ACNGT	2 cut(s)	427, 436
HpyCH4IV	ACGT	2 cut(s)	274, 336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 254
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	274, 336
Kzo9I	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
LmnI	GCTCC	2 cut(s)	27, 151
LpnPI	CCDG	3 cut(s)	52, 75, 81
MaeI	CTAG	1 cut(s)	457
MaeII	ACGT	2 cut(s)	274, 336
MalI	GATC	7 cut(s)	232, 261, 352, 360, 400, 408, 447
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
MboII	GAAGA	1 cut(s)	269
MflI	RGATCY	3 cut(s)	350, 398, 445
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	42, 67, 70, 74, 182, 247, 257, 305
MroXI	GAANNNNTTC	1 cut(s)	276
MseI	TTAA	1 cut(s)	201
MspI	CCGG	2 cut(s)	39, 62
MspR9I	CCNGG	2 cut(s)	39, 62
MwoI	GCNNNNNNNGC	2 cut(s)	124, 254
NciI	CCSGG	2 cut(s)	39, 62
NdeII	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
NlaIV	GGNNCC	9 cut(s)	6, 66, 147, 288, 373, 400, 421, 438, 447
PdmI	GAANNNNTTC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	168, 222
PflMI	CCANNNNNTGG	1 cut(s)	141
Ple19I	CGATCG	1 cut(s)	262
Psp1406I	AACGTT	1 cut(s)	336
PspN4I	GGNNCC	9 cut(s)	6, 66, 147, 288, 373, 400, 421, 438, 447
PspPI	GGNCC	3 cut(s)	255, 371, 419
PsuI	RGATCY	3 cut(s)	350, 398, 445
PvuI	CGATCG	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	7 cut(s)	230, 259, 350, 358, 398, 406, 445
Sau96I	GGNCC	3 cut(s)	255, 371, 419
ScrFI	CCNGG	2 cut(s)	39, 62
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	32, 277, 297, 339, 397
SinI	GGWCC	2 cut(s)	371, 419
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	4 cut(s)	99, 155, 248, 375
SspMI	CTAG	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	37, 60
TaaI	ACNGT	2 cut(s)	427, 436
TaiI	ACGT	2 cut(s)	277, 339
TaqI	TCGA	2 cut(s)	262, 357
TasI	AATT	1 cut(s)	364
TfiI	GAWTC	2 cut(s)	168, 222
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	430
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	2 cut(s)	371, 419
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	276
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.