Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

5604170 .. 5604839

Gene Structure 670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTTGTCGGGCAGCCAACCACTCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGGGCCTTTACTATGATAAGGGTTTTAAGCGTCCAACTCCCGAGCAGATTCAAGAGATCGCCTCGCATGAAGCATTTGGGCCGATCGAGGACAAAAACGTCTTCTTTTGGTTCCTTCTACGGATAAAGGTGGATCCATTGATCCGAACTTTGGTCCCACTCGTTCCTACGTGTGCCGATGGATCCATCTATCCGGCTTTTGGGTCAAACGTCGACCATCATGTTGACCCAAATTCCACTTCACCCTTCAACAATAACAACAAGACTACCTCCTTCGGCACAACAGAGGTCAACCATCCATGGAACAACGAGAAGGAGATCAACGGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCATAGAGAGGATATCCTTGGTAACCCGATGACTACTTCGAGGAAGGTAGCGCATACGGTTACTATCCCGGTGGCTCGGGCAATCACAACGGTGGCTCTAAAGTCTCTCTTGAGCTCGGCCTCAACCCATCCGGAGCCGCCGACTTATCTTAGTATAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

192

Amino Acids

21.46

Weight (kDa)

9.07

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	547
AciI	CCGC	2 cut(s)	41, 554
AclWI	GGATC	5 cut(s)	188, 196, 201, 237, 250
AcsI	RAATTY	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	27, 211, 260
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	113, 310
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AleI	CACNNNNGTG	1 cut(s)	506
AluBI	AGCT	1 cut(s)	531
AluI	AGCT	1 cut(s)	531
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	1 cut(s)	525
AlwI	GGATC	5 cut(s)	188, 196, 201, 237, 250
Ama87I	CYCGRG	2 cut(s)	101, 492
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	3 cut(s)	64, 140, 534
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	64, 140, 214
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	294
AvaI	CYCGRG	2 cut(s)	101, 492
AvaII	GGWCC	1 cut(s)	214
BamHI	GGATCC	2 cut(s)	193, 242
BanII	GRGCYC	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	154
Bbv12I	GWGCWC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	5 cut(s)	233, 254, 285, 363, 552
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	525
BisI	GCNGC	2 cut(s)	14, 554
BlsI	GCNGC	2 cut(s)	15, 555
Bme1390I	CCNGG	1 cut(s)	485
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	2 cut(s)	101, 492
BmgT120I	GGNCC	3 cut(s)	64, 140, 214
BmiI	GGNNCC	5 cut(s)	173, 195, 216, 244, 552
BmrFI	CCNGG	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	154
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpuEI	CTTGAG	2 cut(s)	44, 547
BpuMI	CCSGG	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	359, 433
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 211, 260
BseAI	TCCGGA	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	359, 433
BseGI	GGATG	2 cut(s)	355, 544
BseLI	CCNNNNNNNGG	3 cut(s)	27, 211, 260
BseXI	GCAGC	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	66, 142, 536
BsiEI	CGRYCG	1 cut(s)	147
BsiHKAI	GWGCWC	1 cut(s)	533
BsiHKCI	CYCGRG	2 cut(s)	101, 492
BsiSI	CCGG	3 cut(s)	254, 485, 548
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	27, 211, 260
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	3 cut(s)	66, 142, 536
BsoBI	CYCGRG	2 cut(s)	101, 492
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
Bsp19I	CCATGG	1 cut(s)	359
BspACI	CCGC	2 cut(s)	41, 554
BspANI	GGCC	3 cut(s)	66, 142, 536
BspEI	TCCGGA	1 cut(s)	547
BspLI	GGNNCC	5 cut(s)	173, 195, 216, 244, 552
BspPI	GGATC	5 cut(s)	188, 196, 201, 237, 250
BssECI	CCNNGG	2 cut(s)	359, 433
BssMI	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
BssT1I	CCWWGG	2 cut(s)	359, 433
Bst4CI	ACNGT	2 cut(s)	475, 508
Bst6I	CTCTTC	1 cut(s)	404
BstBAI	YACGTR	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	50, 566
BstDSI	CCRYGG	1 cut(s)	359
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	2 cut(s)	355, 544
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	7 cut(s)	120, 147, 196, 204, 245, 381, 392
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
BstMCI	CGRYCG	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstPI	GGTNACC	1 cut(s)	437
BstSCI	CCNGG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	193, 242
BstYI	RGATCY	2 cut(s)	193, 242
BsuRI	GGCC	3 cut(s)	66, 142, 536
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	355, 544
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	64, 140, 214
CseI	GACGC	1 cut(s)	80
CviAII	CATG	3 cut(s)	128, 281, 360
CviJI	RGCY	9 cut(s)	16, 66, 142, 257, 491, 512, 531, 536, 553
CviKI_1	RGCY	9 cut(s)	16, 66, 142, 257, 491, 512, 531, 536, 553
DdeI	CTNAG	2 cut(s)	50, 566
DpnI	GATC	7 cut(s)	119, 146, 195, 203, 244, 380, 391
DpnII	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
DraIII	CACNNNGTG	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	531
Eco130I	CCWWGG	2 cut(s)	359, 433
Eco24I	GRGCYC	1 cut(s)	533
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	531
Eco88I	CYCGRG	2 cut(s)	101, 492
Eco91I	GGTNACC	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	2 cut(s)	359, 433
EcoT38I	GRGCYC	1 cut(s)	533
ErhI	CCWWGG	2 cut(s)	359, 433
FaeI	CATG	3 cut(s)	131, 284, 363
FaiI	YATR	7 cut(s)	75, 129, 282, 361, 420, 471, 572
FalI	AAGNNNNNCTT	2 cut(s)	509, 541
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	3 cut(s)	127, 280, 359
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	14, 554
FokI	GGATG	2 cut(s)	342, 531
FriOI	GRGCYC	1 cut(s)	533
Fsp4HI	GCNGC	2 cut(s)	14, 554
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	2 cut(s)	14, 554
HaeIII	GGCC	3 cut(s)	66, 142, 536
HapII	CCGG	3 cut(s)	254, 485, 548
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	3 cut(s)	131, 284, 363
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	3 cut(s)	274, 286, 352
HindII	GTYRAC	3 cut(s)	274, 286, 352
HinfI	GANTC	3 cut(s)	31, 54, 109
HpaII	CCGG	3 cut(s)	254, 485, 548
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	4 cut(s)	30, 274, 286, 352
Hpy188I	TCNGA	1 cut(s)	206
Hpy188III	TCNNGA	4 cut(s)	101, 113, 526, 548
Hpy8I	GTNNAC	4 cut(s)	30, 274, 286, 352
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	5 cut(s)	185, 316, 343, 367, 454
HpyCH4III	ACNGT	2 cut(s)	475, 508
HpyCH4IV	ACGT	3 cut(s)	159, 230, 270
HpyCH4V	TGCA	1 cut(s)	418
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	50, 566
HpySE526I	ACGT	3 cut(s)	159, 230, 270
Hsp92II	CATG	3 cut(s)	131, 284, 363
HspAI	GCGC	1 cut(s)	467
Kpn2I	TCCGGA	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
LmnI	GCTCC	1 cut(s)	550
LpnPI	CCDG	3 cut(s)	267, 498, 561
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	3 cut(s)	159, 230, 270
MaeIII	GTNAC	2 cut(s)	437, 475
MalI	GATC	7 cut(s)	119, 146, 195, 203, 244, 380, 391
MboI	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
MboII	GAAGA	2 cut(s)	154, 391
MflI	RGATCY	2 cut(s)	193, 242
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	119
MroI	TCCGGA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	506
MspI	CCGG	3 cut(s)	254, 485, 548
MspR9I	CCNGG	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	10
NciI	CCSGG	1 cut(s)	485
NcoI	CCATGG	1 cut(s)	359
NdeII	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
NlaIII	CATG	3 cut(s)	131, 284, 363
NlaIV	GGNNCC	5 cut(s)	173, 195, 216, 244, 552
NmeAIII	GCCGAG	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	506
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	54, 109
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	15, 555
Ple19I	CGATCG	1 cut(s)	147
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	533
PspEI	GGTNACC	1 cut(s)	437
PspN4I	GGNNCC	5 cut(s)	173, 195, 216, 244, 552
PspPI	GGNCC	3 cut(s)	64, 140, 214
PsuI	RGATCY	2 cut(s)	193, 242
PvuI	CGATCG	1 cut(s)	147
RseI	CAYNNNNRTG	1 cut(s)	506
SacI	GAGCTC	1 cut(s)	533
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	14, 554
Sau3AI	GATC	7 cut(s)	117, 144, 193, 201, 242, 378, 389
Sau96I	GGNCC	3 cut(s)	64, 140, 214
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	533
SetI	ASST	8 cut(s)	162, 192, 233, 273, 332, 351, 465, 533
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	2 cut(s)	59, 526
SmoI	CTYRAG	2 cut(s)	59, 526
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	41, 554
SstI	GAGCTC	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	2 cut(s)	359, 433
TaaI	ACNGT	2 cut(s)	475, 508
TaiI	ACGT	3 cut(s)	162, 233, 273
TaqI	TCGA	4 cut(s)	147, 273, 392, 455
TasI	AATT	1 cut(s)	292
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	54, 109
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.