Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

60974124 .. 60974447

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAACCACGCACTCTACAACTAATGGAGCTTCAAACCCAGCAACAATTGGAATCACAAGCCCAAGAACCGGCCGAGGAGGGAGGAAGCAACCAAGCAACGAGGAGTAGTGCCAATATGCCCGTCGGCGCACCAAATACTCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGACCCTTTACTATGATAAGGGTTTTAAGCGTCCAACTCTTGAGCAGATTCAAGAGATCCGCCTCGATGCGGCGTTTGGGCGGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGGAACCTCAAATCTCGACGAGCCGGCGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

107

Amino Acids

12.31

Weight (kDa)

9.59

Isoelectric Point (pI)

78.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	47 - 103	1.5e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	5 cut(s)	158, 238, 248, 259, 318
AclWI	GGATC	2 cut(s)	229, 269
AcoI	YGGCCR	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	70, 247
AgsI	TTSAA	2 cut(s)	35, 230
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AlwI	GGATC	2 cut(s)	229, 269
Aor13HI	TCCGGA	1 cut(s)	291
AoxI	GGCC	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	271
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmiI	GGNNCC	3 cut(s)	6, 290, 296
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	2 cut(s)	161, 239
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 247
Bse118I	RCCGGY	2 cut(s)	70, 314
BseAI	TCCGGA	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	2 cut(s)	70, 247
BseRI	GAGGAG	2 cut(s)	92, 118
BseX3I	CGGCCG	1 cut(s)	72
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	74
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	3 cut(s)	71, 292, 315
BslI	CCNNNNNNNGG	2 cut(s)	70, 247
BsnI	GGCC	1 cut(s)	74
Bsp13I	TCCGGA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	234, 261
BspACI	CCGC	5 cut(s)	158, 238, 248, 259, 318
BspANI	GGCC	1 cut(s)	74
BspEI	TCCGGA	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	6, 290, 296
BspPI	GGATC	2 cut(s)	229, 269
BsrFI	RCCGGY	2 cut(s)	70, 314
BssAI	RCCGGY	2 cut(s)	70, 314
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	234, 261
BstC8I	GCNNGC	1 cut(s)	316
BstDEI	CTNAG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	237, 264
BstMBI	GATC	2 cut(s)	234, 261
BstMCI	CGRYCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	316
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	2 cut(s)	70, 314
CseI	GACGC	1 cut(s)	197
CviJI	RGCY	4 cut(s)	31, 62, 74, 314
CviKI_1	RGCY	4 cut(s)	31, 62, 74, 314
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	2 cut(s)	236, 263
DpnII	GATC	2 cut(s)	234, 261
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
EciI	GGCGGA	2 cut(s)	227, 274
EclXI	CGGCCG	1 cut(s)	72
Eco52I	CGGCCG	1 cut(s)	72
FaiI	YATR	2 cut(s)	119, 192
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	74
HapII	CCGG	3 cut(s)	71, 292, 315
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	4 cut(s)	53, 148, 171, 226
HpaII	CCGG	3 cut(s)	71, 292, 315
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188III	TCNNGA	5 cut(s)	178, 218, 230, 292, 306
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	2 cut(s)	128, 312
HpyCH4IV	ACGT	1 cut(s)	276
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	1 cut(s)	276
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	291
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	234, 261
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	53, 84, 305
LweI	GCATC	1 cut(s)	235
MaeII	ACGT	1 cut(s)	276
MalI	GATC	2 cut(s)	236, 263
MboI	GATC	2 cut(s)	234, 261
MboII	GAAGA	1 cut(s)	271
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	9 cut(s)	70, 73, 77, 96, 171, 185, 251, 259, 308
MroI	TCCGGA	1 cut(s)	291
MroNI	GCCGGC	1 cut(s)	314
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	204
MspI	CCGG	3 cut(s)	71, 292, 315
MunI	CAATTG	1 cut(s)	47
NaeI	GCCGGC	1 cut(s)	316
NdeII	GATC	2 cut(s)	234, 261
NgoMIV	GCCGGC	1 cut(s)	314
NlaIV	GGNNCC	3 cut(s)	6, 290, 296
NmeAIII	GCCGAG	1 cut(s)	100
PdiI	GCCGGC	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	53, 171, 226
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	6, 290, 296
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	234, 261
SchI	GAGTC	1 cut(s)	142
SetI	ASST	3 cut(s)	33, 279, 300
SfaNI	GCATC	1 cut(s)	235
SmlI	CTYRAG	2 cut(s)	176, 218
SmoI	CTYRAG	2 cut(s)	176, 218
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	5 cut(s)	158, 238, 248, 259, 318
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	243, 264, 307
TasI	AATT	1 cut(s)	47
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	3 cut(s)	53, 171, 226
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.