Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

10337529 .. 10337867

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGCTCGTCGTGCAGCCAACCACTCGGTGGGCTCCCACACCGCCTCGCCTAAGAATCCTCATGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACCCCGCAGCGATTCAAGAGATCAGCCTCAACTGCCAGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGTAACCTCAAATCTCGGGAGAGCCGGCAGATGAAGGCATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATCCGAACTTTGGTTCCACTAATCCTACAGTGCCGATGGGTCCATCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

11.16

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	3 cut(s)	41, 101, 255
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	4 cut(s)	238, 273, 281, 286
AdeI	CACNNNGTG	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	27, 296
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	131
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
AlwI	GGATC	4 cut(s)	238, 273, 281, 286
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	2 cut(s)	64, 134
ApeKI	GCWGC	2 cut(s)	13, 103
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	64, 251, 326
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	2 cut(s)	251, 326
BamHI	GGATCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	25, 115
BccI	CCATC	3 cut(s)	290, 316, 337
BciT130I	CCWGG	1 cut(s)	133
BfaI	CTAG	1 cut(s)	337
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	14, 104
BlsI	GCNGC	2 cut(s)	15, 105
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	2 cut(s)	251, 326
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	64, 251, 326
BmiI	GGNNCC	6 cut(s)	33, 167, 253, 280, 301, 327
BmrFI	CCNGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	148
Bsa29I	ATCGAT	2 cut(s)	285, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 296
Bse118I	RCCGGY	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	133
BseCI	ATCGAT	2 cut(s)	285, 332
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	2 cut(s)	27, 296
BseXI	GCAGC	2 cut(s)	25, 115
BsgI	GTGCAG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	66, 136
BshVI	ATCGAT	2 cut(s)	285, 332
BsiEI	CGRYCG	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	2 cut(s)	27, 296
BsnI	GGCC	2 cut(s)	66, 136
BsoBI	CYCGRG	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
BspACI	CCGC	3 cut(s)	41, 101, 255
BspANI	GGCC	2 cut(s)	66, 136
BspDI	ATCGAT	2 cut(s)	285, 332
BspLI	GGNNCC	6 cut(s)	33, 167, 253, 280, 301, 327
BspPI	GGATC	4 cut(s)	238, 273, 281, 286
BsrFI	RCCGGY	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	192
BssMI	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
Bst2UI	CCWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	7 cut(s)	119, 141, 233, 241, 281, 289, 336
BstMBI	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 128
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	25, 115
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	230, 278
BstYI	RGATCY	2 cut(s)	230, 278
Bsu15I	ATCGAT	2 cut(s)	285, 332
BsuRI	GGCC	2 cut(s)	66, 136
BsuTUI	ATCGAT	2 cut(s)	285, 332
BtsCI	GGATG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	321
Cac8I	GCNNGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	64, 251, 326
ClaI	ATCGAT	2 cut(s)	285, 332
CseI	GACGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	16, 32, 66, 84, 122, 136, 192
CviKI_1	RGCY	7 cut(s)	16, 32, 66, 84, 122, 136, 192
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	7 cut(s)	118, 140, 232, 240, 280, 288, 335
DpnII	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
DraIII	CACNNNGTG	1 cut(s)	27
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	34
Eco47I	GGWCC	2 cut(s)	251, 326
Eco88I	CYCGRG	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	34
FaeI	CATG	1 cut(s)	64
FaiI	YATR	2 cut(s)	62, 75
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FatI	CATG	1 cut(s)	60
FauI	CCCGC	2 cut(s)	108, 262
Fnu4HI	GCNGC	2 cut(s)	14, 104
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	14, 104
FspBI	CTAG	1 cut(s)	337
GluI	GCNGC	2 cut(s)	14, 104
HaeIII	GGCC	2 cut(s)	66, 136
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	2 cut(s)	54, 108
HpaII	CCGG	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	213, 291
Hpy188III	TCNNGA	3 cut(s)	112, 185, 236
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	196, 266
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	2 cut(s)	153, 216
HpyCH4V	TGCA	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 128
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	153, 216
Hsp92II	CATG	1 cut(s)	64
KroI	GCCGGC	1 cut(s)	192
KroNI	GCCGGC	1 cut(s)	194
Kzo9I	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	118, 145, 206
Lsp1109I	GCAGC	2 cut(s)	25, 115
MaeI	CTAG	1 cut(s)	337
MaeII	ACGT	2 cut(s)	153, 216
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	7 cut(s)	118, 140, 232, 240, 280, 288, 335
MboI	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	2 cut(s)	230, 278
MhlI	GDGCHC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	5 cut(s)	54, 68, 133, 136, 185
MroNI	GCCGGC	1 cut(s)	192
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	87
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	2 cut(s)	10, 128
NaeI	GCCGGC	1 cut(s)	194
NdeII	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
NgoMIV	GCCGGC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	6 cut(s)	33, 167, 253, 280, 301, 327
PdiI	GCCGGC	1 cut(s)	194
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	54, 108
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	15, 105
Ple19I	CGATCG	1 cut(s)	141
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	6 cut(s)	33, 167, 253, 280, 301, 327
PspPI	GGNCC	3 cut(s)	64, 251, 326
PsuI	RGATCY	2 cut(s)	230, 278
PvuI	CGATCG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	14, 104
Sau3AI	GATC	7 cut(s)	116, 138, 230, 238, 278, 286, 333
Sau96I	GGNCC	3 cut(s)	64, 251, 326
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	4 cut(s)	156, 177, 219, 277
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	251, 326
SsiI	CCGC	3 cut(s)	41, 101, 255
SspMI	CTAG	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	2 cut(s)	156, 219
TaqI	TCGA	4 cut(s)	141, 237, 285, 332
TfiI	GAWTC	2 cut(s)	54, 108
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	321
TseI	GCWGC	2 cut(s)	13, 103
TspDTI	ATGAA	2 cut(s)	215, 285
TspGWI	ACGGA	2 cut(s)	158, 281
TspRI	CASTG	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	27
VpaK11BI	GGWCC	2 cut(s)	251, 326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.