Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000174

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

27596 .. 28263

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_174G00435100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAACCACGAACTGCGCAGCTAATGGAGCTTCAAACCCGGAACAAATGGAATTACAAGCCCGGAACCCGCCGAGGAGGGAGGAAGCAACCAAGCGGCGGGAGAAGTGCCAATATGCCGTCGGGGCAGCCAAATACTCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCGAGAGCCTTTACTATGATAAGGGTTTTAAGCGTCCAACTCCGAGCGATTCAAGAGATCCGCCTCGATCCGCGGTTTGGGCGGATCAAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAGAGCCGGCAGATGAAGGCATTTCGGAACGTTTGGGTTGGTGGATCTCTTGATCTCGACTTTGGACCCGCAAGTTCTACGATGAAGGAGGACAACCTTCCATGGAACAACGATGAAGAGATCGGCGAGGAGATCGAAACTCTTCCTTTGTTCCCCGTGCATAGAGAGGACATCCTTGGTAACCCGATGACTACTTCGAGAGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

170

Amino Acids

19.4

Weight (kDa)

9.74

Isoelectric Point (pI)

70.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	270
Acc16I	TGCGCA	1 cut(s)	18
AccII	CGCG	1 cut(s)	245
AciI	CCGC	9 cut(s)	70, 96, 99, 155, 233, 243, 245, 254, 372
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	4 cut(s)	224, 234, 264, 355
AfiI	CCNNNNNNNGG	2 cut(s)	98, 249
AgsI	TTSAA	2 cut(s)	35, 225
AluBI	AGCT	2 cut(s)	22, 31
AluI	AGCT	2 cut(s)	22, 31
AlwI	GGATC	4 cut(s)	224, 234, 264, 355
Ama87I	CYCGRG	2 cut(s)	173, 300
ApeKI	GCWGC	2 cut(s)	19, 127
Asp700I	GAANNNNTTC	2 cut(s)	273, 444
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	2 cut(s)	40, 63
AvaI	CYCGRG	2 cut(s)	173, 300
AvaII	GGWCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	31, 139
BceAI	ACGGC	1 cut(s)	103
BcnI	CCSGG	2 cut(s)	40, 63
BglI	GCCNNNNNGGC	1 cut(s)	124
BisI	GCNGC	3 cut(s)	20, 97, 128
BlsI	GCNGC	3 cut(s)	21, 98, 129
Bme1390I	CCNGG	2 cut(s)	40, 63
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	2 cut(s)	173, 300
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	4 cut(s)	6, 67, 285, 370
BmrFI	CCNGG	2 cut(s)	40, 63
BpiI	GAAGAC	1 cut(s)	266
BpuMI	CCSGG	2 cut(s)	40, 63
BsaJI	CCNNGG	4 cut(s)	73, 243, 404, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 249
Bse118I	RCCGGY	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	73, 243, 404, 478
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	98, 249
BseRI	GAGGAG	2 cut(s)	90, 446
BseXI	GCAGC	2 cut(s)	31, 139
Bsh1236I	CGCG	1 cut(s)	245
BsiHKCI	CYCGRG	2 cut(s)	173, 300
BsiSI	CCGG	3 cut(s)	40, 63, 310
BslI	CCNNNNNNNGG	2 cut(s)	98, 249
BsoBI	CYCGRG	2 cut(s)	173, 300
Bsp143I	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	9 cut(s)	70, 96, 99, 155, 233, 243, 245, 254, 372
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	4 cut(s)	6, 67, 285, 370
BspPI	GGATC	4 cut(s)	224, 234, 264, 355
BsrFI	RCCGGY	1 cut(s)	309
BssAI	RCCGGY	1 cut(s)	309
BssECI	CCNNGG	4 cut(s)	73, 243, 404, 478
BssMI	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
BssT1I	CCWWGG	2 cut(s)	404, 478
Bst6I	CTCTTC	2 cut(s)	414, 450
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	2 cut(s)	243, 404
BstEII	GGTNACC	1 cut(s)	482
BstF5I	GGATG	1 cut(s)	474
BstFNI	CGCG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	7 cut(s)	232, 242, 259, 350, 358, 426, 438
BstMBI	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 124, 251
BstPI	GGTNACC	1 cut(s)	482
BstSCI	CCNGG	2 cut(s)	38, 61
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	31, 139
BstV2I	GAAGAC	1 cut(s)	266
BstX2I	RGATCY	2 cut(s)	229, 347
BstYI	RGATCY	2 cut(s)	229, 347
BtgI	CCRYGG	2 cut(s)	243, 404
BtsCI	GGATG	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	311
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	309
Cfr13I	GGNCC	1 cut(s)	368
Cfr42I	CCGCGG	1 cut(s)	246
CseI	GACGC	1 cut(s)	194
CviAII	CATG	1 cut(s)	405
CviJI	RGCY	6 cut(s)	22, 31, 61, 130, 180, 309
CviKI_1	RGCY	6 cut(s)	22, 31, 61, 130, 180, 309
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	7 cut(s)	231, 241, 258, 349, 357, 425, 437
DpnII	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
DrdI	GACNNNNNNGTC	1 cut(s)	270
DseDI	GACNNNNNNGTC	1 cut(s)	270
Eam1104I	CTCTTC	2 cut(s)	414, 450
EarI	CTCTTC	2 cut(s)	414, 450
EciI	GGCGGA	2 cut(s)	222, 269
Eco130I	CCWWGG	2 cut(s)	404, 478
Eco47I	GGWCC	1 cut(s)	368
Eco88I	CYCGRG	2 cut(s)	173, 300
Eco91I	GGTNACC	1 cut(s)	482
EcoO65I	GGTNACC	1 cut(s)	482
EcoT14I	CCWWGG	2 cut(s)	404, 478
ErhI	CCWWGG	2 cut(s)	404, 478
FaeI	CATG	1 cut(s)	408
FaiI	YATR	4 cut(s)	116, 189, 406, 465
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	1 cut(s)	404
FauI	CCCGC	3 cut(s)	77, 92, 379
Fnu4HI	GCNGC	3 cut(s)	20, 97, 128
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	3 cut(s)	20, 97, 128
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	3 cut(s)	20, 97, 128
HapII	CCGG	3 cut(s)	40, 63, 310
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	3 cut(s)	145, 168, 221
HpaII	CCGG	3 cut(s)	40, 63, 310
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	3 cut(s)	216, 288, 330
Hpy188III	TCNNGA	7 cut(s)	175, 225, 300, 302, 353, 359, 501
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	4 cut(s)	313, 382, 410, 501
HpyCH4IV	ACGT	2 cut(s)	271, 333
HpyCH4V	TGCA	1 cut(s)	463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 124, 251
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	271, 333
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	1 cut(s)	17
KroI	GCCGGC	1 cut(s)	309
KroNI	GCCGGC	1 cut(s)	311
KspI	CCGCGG	1 cut(s)	246
Kzo9I	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	53, 76, 323
Lsp1109I	GCAGC	2 cut(s)	31, 139
MaeII	ACGT	2 cut(s)	271, 333
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	7 cut(s)	231, 241, 258, 349, 357, 425, 437
MboI	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
MboII	GAAGA	3 cut(s)	266, 431, 437
MflI	RGATCY	2 cut(s)	229, 347
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	233
MroNI	GCCGGC	1 cut(s)	309
MroXI	GAANNNNTTC	2 cut(s)	273, 444
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	3 cut(s)	40, 63, 310
MspR9I	CCNGG	2 cut(s)	40, 63
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	28, 124, 251
NaeI	GCCGGC	1 cut(s)	311
NciI	CCSGG	2 cut(s)	40, 63
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
NgoMIV	GCCGGC	1 cut(s)	309
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	4 cut(s)	6, 67, 285, 370
NmeAIII	GCCGAG	1 cut(s)	98
NsbI	TGCGCA	1 cut(s)	18
PaeR7I	CTCGAG	2 cut(s)	173, 300
PdiI	GCCGGC	1 cut(s)	311
PdmI	GAANNNNTTC	2 cut(s)	273, 444
PfeI	GAWTC	2 cut(s)	168, 221
PkrI	GCNGC	3 cut(s)	21, 98, 129
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp1406I	AACGTT	1 cut(s)	333
PspEI	GGTNACC	1 cut(s)	482
PspN4I	GGNNCC	4 cut(s)	6, 67, 285, 370
PspPI	GGNCC	1 cut(s)	368
PsuI	RGATCY	2 cut(s)	229, 347
SacII	CCGCGG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	20, 97, 128
Sau3AI	GATC	7 cut(s)	229, 239, 256, 347, 355, 423, 435
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	40, 63
SetI	ASST	7 cut(s)	24, 33, 274, 294, 336, 402, 512
Sfr274I	CTCGAG	2 cut(s)	173, 300
Sfr303I	CCGCGG	1 cut(s)	246
SgrBI	CCGCGG	1 cut(s)	246
SinI	GGWCC	1 cut(s)	368
SlaI	CTCGAG	2 cut(s)	173, 300
SmlI	CTYRAG	2 cut(s)	173, 300
SmoI	CTYRAG	2 cut(s)	173, 300
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	9 cut(s)	70, 96, 99, 155, 233, 243, 245, 254, 372
StyD4I	CCNGG	2 cut(s)	38, 61
StyI	CCWWGG	2 cut(s)	404, 478
TaiI	ACGT	2 cut(s)	274, 336
TaqI	TCGA	6 cut(s)	174, 238, 301, 360, 438, 500
TasI	AATT	1 cut(s)	52
TauI	GCSGC	1 cut(s)	99
TfiI	GAWTC	2 cut(s)	168, 221
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseI	GCWGC	2 cut(s)	19, 127
TspDTI	ATGAA	3 cut(s)	332, 401, 432
VpaK11BI	GGWCC	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	138
XhoI	CTCGAG	2 cut(s)	173, 300
XmnI	GAANNNNTTC	2 cut(s)	273, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.