Rroxscaffold_4G00332570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000483
Physical Location & Seq
Reverse (-)
66763778 .. 66764230
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332570.1

Sequence Viewer

Length: 453 bp
ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCTATCTCAACTTTGGACCCGCTTGTTCTACTAATCAAGGTGGATCCATCGATCTAAACTTTGGTTCCACCGATTCTACAGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGACCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCGGTACTACTTCCTTTGGCACAACAGAGGACAACTTTTCATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTGTTCCTCGTGCACAAGTGAGGACGTTCTTGGTAACCCGAAAACTACTTTCGAGGAAGGTAGCGCATACGGTTACCATTCGGTGGCTCGGGCATTACAACAATGGCTCTCAAGTCTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCCGCTAACTTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.15

Weight (kDa)

11.36

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 372
AccI GTMKAC 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 431
AciI CCGC 2 cut(s) 57, 438
AclI AACGTT 1 cut(s) 18
AclWI GGATC 6 cut(s) 40, 75, 88, 122, 135, 156
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 372
AgeI ACCGGT 1 cut(s) 205
AgsI TTSAA 2 cut(s) 141, 195
AluBI AGCT 2 cut(s) 415, 449
AluI AGCT 2 cut(s) 415, 449
Alw21I GWGCWC 2 cut(s) 304, 417
Alw26I GTCTC 1 cut(s) 409
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 6 cut(s) 40, 75, 88, 122, 135, 156
Ama87I CYCGRG 1 cut(s) 377
Aor13HI TCCGGA 1 cut(s) 431
ApaLI GTGCAC 1 cut(s) 300
AsiGI ACCGGT 1 cut(s) 205
Asp700I GAANNNNTTC 1 cut(s) 283
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 304
BamHI GGATCC 2 cut(s) 80, 127
BanII GRGCYC 1 cut(s) 417
BauI CACGAG 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 304, 417
BccI CCATC 3 cut(s) 92, 118, 436
BcoDI GTCTC 1 cut(s) 409
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 438
BlpI GCTNAGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 5 cut(s) 55, 82, 103, 129, 436
Bpu1102I GCTNAGC 1 cut(s) 416
BpuEI CTTGAG 2 cut(s) 384, 431
Bsa29I ATCGAT 1 cut(s) 87
BsaWI WCCGGW 2 cut(s) 205, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 372
Bse118I RCCGGY 1 cut(s) 205
BseAI TCCGGA 1 cut(s) 431
BseCI ATCGAT 1 cut(s) 87
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 1 cut(s) 372
BseMII CTCAG 1 cut(s) 430
BseRI GAGGAG 3 cut(s) 174, 271, 274
BseSI GKGCMC 1 cut(s) 304
BshTI ACCGGT 1 cut(s) 205
BshVI ATCGAT 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 304, 417
BsiHKCI CYCGRG 1 cut(s) 377
BsiSI CCGG 2 cut(s) 206, 432
BslI CCNNNNNNNGG 1 cut(s) 372
BsmAI GTCTC 1 cut(s) 409
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 304, 417
Bsp13I TCCGGA 1 cut(s) 431
Bsp143I GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
Bsp1720I GCTNAGC 1 cut(s) 416
BspACI CCGC 2 cut(s) 57, 438
BspCNI CTCAG 1 cut(s) 429
BspDI ATCGAT 1 cut(s) 87
BspEI TCCGGA 1 cut(s) 431
BspLI GGNNCC 5 cut(s) 55, 82, 103, 129, 436
BspPI GGATC 6 cut(s) 40, 75, 88, 122, 135, 156
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssMI GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
BssSI CACGAG 1 cut(s) 297
Bst2BI CACGAG 1 cut(s) 297
Bst4CI ACNGT 2 cut(s) 118, 361
Bst6I CTCTTC 1 cut(s) 289
BstDEI CTNAG 3 cut(s) 416, 445, 450
BstEII GGTNACC 2 cut(s) 322, 361
BstF5I GGATG 1 cut(s) 428
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 7 cut(s) 35, 83, 91, 130, 151, 266, 277
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstPI GGTNACC 2 cut(s) 322, 361
BstSFI CTRYAG 1 cut(s) 114
BstSLI GKGCMC 1 cut(s) 304
BstX2I RGATCY 3 cut(s) 32, 80, 127
BstYI RGATCY 3 cut(s) 32, 80, 127
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 123
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 209
CspAI ACCGGT 1 cut(s) 205
CviAII CATG 2 cut(s) 152, 245
CviJI RGCY 6 cut(s) 376, 396, 415, 420, 437, 449
CviKI_1 RGCY 6 cut(s) 376, 396, 415, 420, 437, 449
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 3 cut(s) 416, 445, 450
DpnI GATC 7 cut(s) 34, 82, 90, 129, 150, 265, 276
DpnII GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 415
Eco24I GRGCYC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 377
Eco91I GGTNACC 2 cut(s) 322, 361
EcoICRI GAGCTC 1 cut(s) 415
EcoO65I GGTNACC 2 cut(s) 322, 361
EcoT38I GRGCYC 1 cut(s) 417
FaeI CATG 2 cut(s) 155, 248
FaiI YATR 5 cut(s) 153, 164, 177, 246, 357
FalI AAGNNNNNCTT 2 cut(s) 393, 425
FatI CATG 2 cut(s) 151, 244
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 415
FriOI GRGCYC 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 438
GlaI GCGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 438
HapII CCGG 2 cut(s) 206, 432
HhaI GCGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 155, 248
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 2 cut(s) 159, 171
HindII GTYRAC 2 cut(s) 159, 171
HinfI GANTC 1 cut(s) 110
HpaII CCGG 2 cut(s) 206, 432
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 3 cut(s) 159, 171, 302
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 410, 432
Hpy8I GTNNAC 3 cut(s) 159, 171, 302
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 118, 361
HpyCH4IV ACGT 2 cut(s) 18, 314
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 3 cut(s) 416, 445, 450
HpySE526I ACGT 2 cut(s) 18, 314
Hsp92II CATG 2 cut(s) 155, 248
HspAI GCGC 1 cut(s) 353
Kpn2I TCCGGA 1 cut(s) 431
Kzo9I GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 3 cut(s) 219, 255, 445
MaeII ACGT 2 cut(s) 18, 314
MaeIII GTNAC 2 cut(s) 322, 361
MalI GATC 7 cut(s) 34, 82, 90, 129, 150, 265, 276
MboI GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
MboII GAAGA 1 cut(s) 276
MflI RGATCY 3 cut(s) 32, 80, 127
MhlI GDGCHC 2 cut(s) 304, 417
MluCI AATT 2 cut(s) 9, 141
MroI TCCGGA 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 283
MspI CCGG 2 cut(s) 206, 432
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
NlaIII CATG 2 cut(s) 155, 248
NlaIV GGNNCC 5 cut(s) 55, 82, 103, 129, 436
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 372
PinAI ACCGGT 1 cut(s) 205
PkrI GCNGC 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 417
Psp1406I AACGTT 1 cut(s) 18
PspEI GGTNACC 2 cut(s) 322, 361
PspN4I GGNNCC 5 cut(s) 55, 82, 103, 129, 436
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 3 cut(s) 32, 80, 127
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SacI GAGCTC 1 cut(s) 417
SalI GTCGAC 1 cut(s) 157
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 7 cut(s) 32, 80, 88, 127, 148, 263, 274
Sau96I GGNCC 1 cut(s) 53
SduI GDGCHC 2 cut(s) 304, 417
SetI ASST 7 cut(s) 21, 79, 192, 317, 351, 417, 451
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 399, 410
SmoI CTYRAG 2 cut(s) 399, 410
Sse9I AATT 2 cut(s) 9, 141
SsiI CCGC 2 cut(s) 57, 438
SstI GAGCTC 1 cut(s) 417
TaaI ACNGT 2 cut(s) 118, 361
TaiI ACGT 2 cut(s) 21, 317
TaqI TCGA 5 cut(s) 87, 134, 158, 277, 341
TasI AATT 2 cut(s) 9, 141
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 1 cut(s) 110
TscAI CASTG 1 cut(s) 123
TspDTI ATGAA 2 cut(s) 17, 233
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 372
VneI GTGCAC 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.