Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

42473555 .. 42485389

Gene Structure 11835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCCTCTGGTGGTTCCGTACCATTACTTTAAAGTTTGGGAATACTCAGATGGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCATATTCCTCCTCATTAACCGTACTACTTCCTTTGGCACAACGGGAGGACAACCTTTCATGGAACAATGAGGAGGAGATCAGCGAGATCGAAACTCTTCCTTTGTTCCCCGTGCACGGTGTAAACTTTCAAGTTGATTTCGTGAACTTCATAGTGAGGAGAGTTTTGTTTTTAGATATGGGTGGAAGGAGTTCAAAGGAGGATGGGAGTTTAGGCAGTCGCTTACGGGCCCGGGTTATCATCTTCTTCATCTTCTTGGAGTGGAGCAACACCGCAAATCTTGAGATGGTGGCTAGCCGAGTGGAAGCACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

140

Amino Acids

15.99

Weight (kDa)

4.74

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	3 cut(s)	57, 70, 91
AcoI	YGGCCR	1 cut(s)	94
AfaI	GTAC	2 cut(s)	20, 132
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	3 cut(s)	76, 239, 303
Alw21I	GWGCWC	1 cut(s)	225
Alw44I	GTGCAC	1 cut(s)	221
AlwI	GGATC	3 cut(s)	57, 70, 91
Ama87I	CYCGRG	1 cut(s)	339
AoxI	GGCC	2 cut(s)	94, 336
ApaI	GGGCCC	1 cut(s)	340
ApaLI	GTGCAC	1 cut(s)	221
Asp700I	GAANNNNTTC	2 cut(s)	204, 298
AspS9I	GGNCC	2 cut(s)	336, 337
AsuC2I	CCSGG	2 cut(s)	340, 341
AsuNHI	GCTAGC	1 cut(s)	401
AvaI	CYCGRG	1 cut(s)	339
BaeGI	GKGCMC	2 cut(s)	225, 340
BamHI	GGATCC	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	225
BccI	CCATC	4 cut(s)	44, 53, 305, 388
BcnI	CCSGG	2 cut(s)	340, 341
BfaI	CTAG	1 cut(s)	402
Bme1390I	CCNGG	2 cut(s)	340, 341
BmeT110I	CYCGRG	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	336, 337
BmiI	GGNNCC	4 cut(s)	15, 55, 64, 338
BmrFI	CCNGG	2 cut(s)	340, 341
BmtI	GCTAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	2 cut(s)	340, 341
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	60
BseRI	GAGGAG	4 cut(s)	109, 194, 197, 280
BseSI	GKGCMC	2 cut(s)	225, 340
BshFI	GGCC	2 cut(s)	96, 338
BshNI	GGYRCC	1 cut(s)	53
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	339
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	224
BsnI	GGCC	2 cut(s)	96, 338
BsoBI	CYCGRG	1 cut(s)	339
Bsp120I	GGGCCC	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	225, 340
Bsp143I	GATC	4 cut(s)	62, 83, 186, 195
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	96, 338
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	4 cut(s)	15, 55, 64, 338
BspOI	GCTAGC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	57, 70, 91
BspT107I	GGYRCC	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	4 cut(s)	62, 83, 186, 195
Bst4CI	ACNGT	3 cut(s)	130, 227, 420
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	4 cut(s)	65, 86, 189, 198
BstMBI	GATC	4 cut(s)	62, 83, 186, 195
BstSCI	CCNGG	2 cut(s)	338, 339
BstSLI	GKGCMC	2 cut(s)	225, 340
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	96, 338
BtsCI	GGATG	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	336, 337
Cfr9I	CCCGGG	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	19, 131
CviAII	CATG	2 cut(s)	87, 168
CviJI	RGCY	4 cut(s)	96, 338, 401, 405
CviKI_1	RGCY	4 cut(s)	96, 338, 401, 405
CviQI	GTAC	2 cut(s)	19, 131
DdeI	CTNAG	1 cut(s)	46
DpnI	GATC	4 cut(s)	64, 85, 188, 197
DpnII	GATC	4 cut(s)	62, 83, 186, 195
DraI	TTTAAA	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	2 cut(s)	90, 171
FaiI	YATR	6 cut(s)	88, 99, 112, 169, 260, 287
FatI	CATG	2 cut(s)	86, 167
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	340
FspBI	CTAG	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	96, 338
HapII	CCGG	1 cut(s)	340
Hin1II	CATG	2 cut(s)	90, 171
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	340
Hpy166II	GTNNAC	4 cut(s)	106, 223, 232, 253
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	2 cut(s)	250, 389
Hpy8I	GTNNAC	4 cut(s)	106, 223, 232, 253
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	3 cut(s)	130, 227, 420
HpyCH4V	TGCA	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	46
Hsp92II	CATG	2 cut(s)	90, 171
Kzo9I	GATC	4 cut(s)	62, 83, 186, 195
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	1 cut(s)	353
MaeI	CTAG	1 cut(s)	402
MalI	GATC	4 cut(s)	64, 85, 188, 197
MboI	GATC	4 cut(s)	62, 83, 186, 195
MboII	GAAGA	4 cut(s)	197, 343, 346, 352
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	2 cut(s)	225, 340
MluCI	AATT	1 cut(s)	76
MnlI	CCTC	8 cut(s)	15, 127, 130, 148, 172, 175, 258, 301
MroXI	GAANNNNTTC	2 cut(s)	204, 298
MseI	TTAA	2 cut(s)	30, 125
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	2 cut(s)	340, 341
NciI	CCSGG	2 cut(s)	340, 341
NdeII	GATC	4 cut(s)	62, 83, 186, 195
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	2 cut(s)	90, 171
NlaIV	GGNNCC	4 cut(s)	15, 55, 64, 338
PdmI	GAANNNNTTC	2 cut(s)	204, 298
PspN4I	GGNNCC	4 cut(s)	15, 55, 64, 338
PspOMI	GGGCCC	1 cut(s)	336
PspPI	GGNCC	2 cut(s)	336, 337
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	2 cut(s)	20, 132
RsaNI	GTAC	2 cut(s)	19, 131
SaqAI	TTAA	2 cut(s)	30, 125
Sau3AI	GATC	4 cut(s)	62, 83, 186, 195
Sau96I	GGNCC	2 cut(s)	336, 337
ScrFI	CCNGG	2 cut(s)	340, 341
SduI	GDGCHC	2 cut(s)	225, 340
SetI	ASST	1 cut(s)	165
SmaI	CCCGGG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	338, 339
TaaI	ACNGT	3 cut(s)	130, 227, 420
TaqI	TCGA	2 cut(s)	69, 198
TasI	AATT	1 cut(s)	76
Tru1I	TTAA	2 cut(s)	30, 125
Tru9I	TTAA	2 cut(s)	30, 125
TspDTI	ATGAA	3 cut(s)	156, 247, 346
TspGWI	ACGGA	2 cut(s)	6, 55
TspMI	CCCGGG	1 cut(s)	339
VneI	GTGCAC	1 cut(s)	221
XmaI	CCCGGG	1 cut(s)	339
XmnI	GAANNNNTTC	2 cut(s)	204, 298
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.