Rroxscaffold_3G00239810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000483
Physical Location & Seq
Forward (+)
30650320 .. 30650622
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00239810.1

Sequence Viewer

Length: 303 bp
ATGAAGGCATTTCGGAAGGTCCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCCGATCCTGAGATGAAGGTGGATCCATTGCTCGAACTTTGGTTCCACGATCCAATAGGTGCCGATAGATCCGTCGATCTAGCTTTTGGGTCAAACGTCGACTATCATGTCGACCCATATTCCACTTCACTTTTCAACAACAACAACGGTACTACCTCCTTCGGCACAACGGAGGTCAACCATCCATGGAACAAAGAGGAGAAGATCGGCGGGAGATCGAAACTCTTCCCCGTTCCCCGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.14

Weight (kDa)

5.84

Isoelectric Point (pI)

23.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 2 cut(s) 156, 168
AciI CCGC 3 cut(s) 30, 57, 267
AclWI GGATC 6 cut(s) 40, 56, 74, 87, 101, 120
AfaI GTAC 1 cut(s) 208
AgsI TTSAA 1 cut(s) 193
AloI GAACNNNNNNTCC 2 cut(s) 84, 116
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
AlwI GGATC 6 cut(s) 40, 56, 74, 87, 101, 120
Asp700I GAANNNNTTC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 19, 53
AsuC2I CCSGG 1 cut(s) 23
AvaII GGWCC 2 cut(s) 19, 53
BamHI GGATCC 1 cut(s) 79
BanI GGYRCC 1 cut(s) 116
BccI CCATC 1 cut(s) 246
BcnI CCSGG 1 cut(s) 23
BfaI CTAG 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 19, 53
BmgT120I GGNCC 2 cut(s) 19, 53
BmiI GGNNCC 4 cut(s) 55, 81, 101, 118
BmrFI CCNGG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 238
BseMI GCAATG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 22
Bsp143I GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
Bsp19I CCATGG 1 cut(s) 242
BspACI CCGC 3 cut(s) 30, 57, 267
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 4 cut(s) 55, 81, 101, 118
BspPI GGATC 6 cut(s) 40, 56, 74, 87, 101, 120
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
BssT1I CCWWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 66
BstDSI CCRYGG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 238
BstKTI GATC 9 cut(s) 35, 43, 64, 82, 109, 128, 136, 264, 275
BstMBI GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
BstSCI CCNGG 1 cut(s) 21
BstX2I RGATCY 3 cut(s) 32, 79, 125
BstYI RGATCY 3 cut(s) 32, 79, 125
BtgI CCRYGG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 19, 53
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 164, 243
CviJI RGCY 1 cut(s) 140
CviKI_1 RGCY 1 cut(s) 140
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 1 cut(s) 66
DpnI GATC 9 cut(s) 34, 42, 63, 81, 108, 127, 135, 263, 274
DpnII GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 19, 53
EcoT14I CCWWGG 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 242
FaeI CATG 2 cut(s) 167, 246
FaiI YATR 4 cut(s) 165, 175, 244, 301
FatI CATG 2 cut(s) 163, 242
FauI CCCGC 2 cut(s) 64, 260
FblI GTMKAC 2 cut(s) 156, 168
FokI GGATG 1 cut(s) 225
FspBI CTAG 1 cut(s) 137
HapII CCGG 1 cut(s) 22
Hin1II CATG 2 cut(s) 167, 246
HincII GTYRAC 3 cut(s) 157, 169, 235
HindII GTYRAC 3 cut(s) 157, 169, 235
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 3 cut(s) 157, 169, 235
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 38, 65
Hpy8I GTNNAC 3 cut(s) 157, 169, 235
Hpy99I CGWCG 2 cut(s) 134, 158
HpyAV CCTTC 3 cut(s) 10, 67, 226
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 299
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 2 cut(s) 167, 246
Kzo9I GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
LpnPI CCDG 2 cut(s) 35, 78
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 153
MalI GATC 9 cut(s) 34, 42, 63, 81, 108, 127, 135, 263, 274
MboI GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
MboII GAAGA 2 cut(s) 271, 274
MflI RGATCY 3 cut(s) 32, 79, 125
MnlI CCTC 3 cut(s) 223, 223, 247
MroXI GAANNNNTTC 1 cut(s) 281
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 242
NdeII GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
NlaIII CATG 2 cut(s) 167, 246
NlaIV GGNNCC 4 cut(s) 55, 81, 101, 118
PdmI GAANNNNTTC 1 cut(s) 281
PspN4I GGNNCC 4 cut(s) 55, 81, 101, 118
PspPI GGNCC 2 cut(s) 19, 53
PsuI RGATCY 3 cut(s) 32, 79, 125
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SalI GTCGAC 2 cut(s) 155, 167
Sau3AI GATC 9 cut(s) 32, 40, 61, 79, 106, 125, 133, 261, 272
Sau96I GGNCC 2 cut(s) 19, 53
ScrFI CCNGG 1 cut(s) 23
SetI ASST 7 cut(s) 21, 78, 118, 142, 156, 215, 234
SinI GGWCC 2 cut(s) 19, 53
SsiI CCGC 3 cut(s) 30, 57, 267
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 1 cut(s) 156
TaqI TCGA 6 cut(s) 39, 90, 132, 156, 168, 275
TspDTI ATGAA 2 cut(s) 17, 86
TspGWI ACGGA 2 cut(s) 118, 242
VpaK11BI GGWCC 2 cut(s) 19, 53
XmiI GTMKAC 2 cut(s) 156, 168
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.