Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

60810395 .. 60810937

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACAAGGGTTTTAAGCGTCCAACTCCCCGAGCGTATTCAAGAGATCGGCCTCAATCCGGCGGTTGGGCGATCGAGGACAAGAACGTCTTCTTTGGTTCCAAAACCTCAAATCCCGAGAGAGCCAACAGATGAAGGCATTTCGGAACGTTTGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGATGAAGGTGGATCCATTGATTCGAACTTTGGTCCCACTGTTCCTATAGGTGCCGATGGGTCCATCTATCTAGCTTTTGGGTCAAACGTCAACCATCATGTTGACCCAAATTCCACTTCACCCTTCAACAATAACAACAAGACTACCTCCTTCGGCACAACGGGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCCGTTCCCCGTGCATAGAGAAGACATCCTTGGTAACCCGATGACTACTTCAGAGGAAGGTAGCGCATACGGTTACTATCCCGGTGGCTCGGCAACACAACAGTGTCTCTCAAGTCTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

180

Amino Acids

19.63

Weight (kDa)

5.17

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	248
AciI	CCGC	2 cut(s)	62, 187
AclI	AACGTT	1 cut(s)	148
AclWI	GGATC	3 cut(s)	170, 204, 217
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	453
AfiI	CCNNNNNNNGG	2 cut(s)	58, 65
AgsI	TTSAA	2 cut(s)	41, 325
AjuI	GAANNNNNNNTTGG	4 cut(s)	298, 330, 432, 464
AleI	CACNNNNGTG	1 cut(s)	520
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw26I	GTCTC	2 cut(s)	530, 539
AlwI	GGATC	3 cut(s)	170, 204, 217
Ama87I	CYCGRG	2 cut(s)	29, 115
AoxI	GGCC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	2 cut(s)	88, 414
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	3 cut(s)	183, 230, 258
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	1 cut(s)	309
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	2 cut(s)	29, 115
AvaII	GGWCC	3 cut(s)	183, 230, 258
BamHI	GGATCC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	248
BbsI	GAAGAC	2 cut(s)	81, 447
BccI	CCATC	3 cut(s)	248, 269, 300
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	2 cut(s)	530, 539
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	3 cut(s)	183, 230, 258
BmeT110I	CYCGRG	2 cut(s)	29, 115
BmgT120I	GGNCC	3 cut(s)	183, 230, 258
BmiI	GGNNCC	6 cut(s)	99, 185, 211, 232, 250, 259
BmrFI	CCNGG	1 cut(s)	501
BpiI	GAAGAC	2 cut(s)	81, 447
Bpu14I	TTCGAA	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	514
BpuMI	CCSGG	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	375, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 65
BseDI	CCNNGG	2 cut(s)	375, 448
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	58, 65
BseRI	GAGGAG	2 cut(s)	402, 405
Bsh1285I	CGRYCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	74
BsiHKCI	CYCGRG	2 cut(s)	29, 115
BsiSI	CCGG	2 cut(s)	59, 501
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	2 cut(s)	58, 65
BsmAI	GTCTC	2 cut(s)	530, 539
BsmFI	GGGAC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	51
BsoBI	CYCGRG	2 cut(s)	29, 115
Bsp119I	TTCGAA	1 cut(s)	221
Bsp143I	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	2 cut(s)	62, 187
BspANI	GGCC	1 cut(s)	51
BspLI	GGNNCC	6 cut(s)	99, 185, 211, 232, 250, 259
BspPI	GGATC	3 cut(s)	170, 204, 217
BspT104I	TTCGAA	1 cut(s)	221
BspT107I	GGYRCC	1 cut(s)	248
BssECI	CCNNGG	2 cut(s)	375, 448
BssMI	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
BssT1I	CCWWGG	2 cut(s)	375, 448
Bst4CI	ACNGT	3 cut(s)	238, 491, 522
Bst6I	CTCTTC	1 cut(s)	420
BstBI	TTCGAA	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	7 cut(s)	48, 74, 165, 173, 212, 397, 408
BstMAI	GTCTC	2 cut(s)	530, 539
BstMBI	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
BstMCI	CGRYCG	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	452
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	243
BstV2I	GAAGAC	2 cut(s)	81, 447
BstX2I	RGATCY	2 cut(s)	162, 209
BstYI	RGATCY	2 cut(s)	162, 209
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	234, 527
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	183, 230, 258
CseI	GACGC	1 cut(s)	7
CviAII	CATG	2 cut(s)	296, 376
CviJI	RGCY	4 cut(s)	51, 124, 272, 507
CviKI_1	RGCY	4 cut(s)	51, 124, 272, 507
DpnI	GATC	7 cut(s)	47, 73, 164, 172, 211, 396, 407
DpnII	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco130I	CCWWGG	2 cut(s)	375, 448
Eco47I	GGWCC	3 cut(s)	183, 230, 258
Eco57I	CTGAAG	1 cut(s)	453
Eco88I	CYCGRG	2 cut(s)	29, 115
Eco91I	GGTNACC	1 cut(s)	452
EcoO65I	GGTNACC	1 cut(s)	452
EcoT14I	CCWWGG	2 cut(s)	375, 448
ErhI	CCWWGG	2 cut(s)	375, 448
FaeI	CATG	2 cut(s)	299, 379
FaiI	YATR	5 cut(s)	245, 297, 377, 435, 487
FalI	AAGNNNNNCTT	5 cut(s)	73, 105, 432, 464, 523
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	2 cut(s)	295, 375
FauI	CCCGC	1 cut(s)	194
FokI	GGATG	1 cut(s)	431
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	1 cut(s)	484
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	2 cut(s)	59, 501
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	299, 379
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	2 cut(s)	289, 301
HindII	GTYRAC	2 cut(s)	289, 301
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	2 cut(s)	59, 501
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	2 cut(s)	289, 301
Hpy188I	TCNGA	2 cut(s)	145, 472
Hpy188III	TCNNGA	4 cut(s)	41, 115, 168, 540
Hpy8I	GTNNAC	2 cut(s)	289, 301
HpyAV	CCTTC	6 cut(s)	128, 197, 331, 358, 381, 470
HpyCH4III	ACNGT	3 cut(s)	238, 491, 522
HpyCH4IV	ACGT	3 cut(s)	86, 148, 285
HpyCH4V	TGCA	1 cut(s)	433
HpySE526I	ACGT	3 cut(s)	86, 148, 285
Hsp92II	CATG	2 cut(s)	299, 379
HspAI	GCGC	1 cut(s)	483
Kzo9I	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
LpnPI	CCDG	3 cut(s)	72, 386, 514
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	3 cut(s)	86, 148, 285
MaeIII	GTNAC	2 cut(s)	452, 491
MalI	GATC	7 cut(s)	47, 73, 164, 172, 211, 396, 407
MboI	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
MboII	GAAGA	3 cut(s)	81, 407, 452
MflI	RGATCY	2 cut(s)	162, 209
MluCI	AATT	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	9 cut(s)	62, 69, 117, 355, 356, 380, 383, 429, 466
MroXI	GAANNNNTTC	2 cut(s)	88, 414
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	520
MspI	CCGG	2 cut(s)	59, 501
MspR9I	CCNGG	1 cut(s)	501
NciI	CCSGG	1 cut(s)	501
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
NlaIII	CATG	2 cut(s)	299, 379
NlaIV	GGNNCC	6 cut(s)	99, 185, 211, 232, 250, 259
NmeAIII	GCCGAG	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	221
OliI	CACNNNNGTG	1 cut(s)	520
PdmI	GAANNNNTTC	2 cut(s)	88, 414
PfeI	GAWTC	1 cut(s)	218
Ple19I	CGATCG	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	148
PspEI	GGTNACC	1 cut(s)	452
PspN4I	GGNNCC	6 cut(s)	99, 185, 211, 232, 250, 259
PspPI	GGNCC	3 cut(s)	183, 230, 258
PsuI	RGATCY	2 cut(s)	162, 209
PvuI	CGATCG	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	520
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	7 cut(s)	45, 71, 162, 170, 209, 394, 405
Sau96I	GGNCC	3 cut(s)	183, 230, 258
ScrFI	CCNGG	1 cut(s)	501
SfcI	CTRYAG	1 cut(s)	243
SfuI	TTCGAA	1 cut(s)	221
SinI	GGWCC	3 cut(s)	183, 230, 258
SmiMI	CAYNNNNRTG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	2 cut(s)	62, 187
SspMI	CTAG	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	2 cut(s)	375, 448
TaaI	ACNGT	3 cut(s)	238, 491, 522
TaiI	ACGT	3 cut(s)	89, 151, 288
TaqI	TCGA	4 cut(s)	74, 169, 221, 408
TasI	AATT	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	2 cut(s)	241, 527
TspDTI	ATGAA	2 cut(s)	147, 216
TspGWI	ACGGA	1 cut(s)	411
TspRI	CASTG	2 cut(s)	241, 527
VpaK11BI	GGWCC	3 cut(s)	183, 230, 258
XapI	RAATTY	1 cut(s)	307
XmnI	GAANNNNTTC	2 cut(s)	88, 414
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.