Rroxscaffold_7G00195040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Forward (+)
37196721 .. 37203297
6577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195040.1

Sequence Viewer

Length: 513 bp
ATGGAACCACAAACCCAAAGAACTAATGGAACTACAAACCCAGCAACCTCTCGGAACTACAAATCCATCAACCTCGGAACCACAAATCCAGCAACTAATAGAGGATGGAGGAAGCAACAAGCGGCGGGAGTAGTGCCAACATGTATTTCGGGCGGAGCGATACTAGGTGGACTCCCACTCCGGATCAAATATGAATCCTTAAGGAGCTTTACTATGACAAGGGAGTTGAGTACCCAACTACAAAGCAGATTCGGGAGATCTGTCTCCATCCGAAACAAGTATGGGCATATTGAGGTCAAAAAAGTCTTTTTTTTGTTCCGGAACCTCAAGGCTCGAGAGAAGCAAAAGAAGAGGTTAAATCGGGGTGTTCGGTGCCCAAGAGCAGAGCATGGGATGCTCAAGAGTGTGGGACACTCCGACCCGAGCCTAGGAGGCTCCCTTTTATTCGTATGGCATGTGTCGGAGTTTGTGAAGTTTCGAGGAAGTGGAAAGATTGAAGCTGTTGGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.97

Weight (kDa)

11.29

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 372
AccIII TCCGGA 2 cut(s) 180, 318
AciI CCGC 3 cut(s) 122, 125, 153
AclWI GGATC 1 cut(s) 191
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 428
AflII CTTAAG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 1 cut(s) 497
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AloI GAACNNNNNNTCC 4 cut(s) 47, 70, 79, 102
AluBI AGCT 2 cut(s) 207, 500
AluI AGCT 2 cut(s) 207, 500
Alw26I GTCTC 1 cut(s) 268
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 2 cut(s) 333, 421
Aor13HI TCCGGA 2 cut(s) 180, 318
AspA2I CCTAGG 1 cut(s) 427
AvaI CYCGRG 2 cut(s) 333, 421
AvrII CCTAGG 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 377
BanI GGYRCC 1 cut(s) 372
BccI CCATC 3 cut(s) 74, 99, 275
BcoDI GTCTC 1 cut(s) 268
BfaI CTAG 2 cut(s) 164, 428
BfrI CTTAAG 1 cut(s) 199
BglI GCCNNNNNGGC 1 cut(s) 432
BglII AGATCT 1 cut(s) 257
BisI GCNGC 1 cut(s) 123
BlnI CCTAGG 1 cut(s) 427
BlsI GCNGC 1 cut(s) 124
BmeT110I CYCGRG 2 cut(s) 333, 421
BmiI GGNNCC 5 cut(s) 6, 79, 323, 374, 436
BmsI GCATC 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 311, 383
BsaJI CCNNGG 2 cut(s) 73, 427
BsaWI WCCGGW 2 cut(s) 180, 318
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 428
BseAI TCCGGA 2 cut(s) 180, 318
BseDI CCNNGG 2 cut(s) 73, 427
BseGI GGATG 3 cut(s) 110, 267, 399
BseLI CCNNNNNNNGG 1 cut(s) 428
BseSI GKGCMC 1 cut(s) 377
BseYI CCCAGC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 372
BsiHKCI CYCGRG 2 cut(s) 333, 421
BsiSI CCGG 2 cut(s) 181, 319
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 268
BsmFI GGGAC 1 cut(s) 423
BsoBI CYCGRG 2 cut(s) 333, 421
Bsp1286I GDGCHC 1 cut(s) 377
Bsp13I TCCGGA 2 cut(s) 180, 318
Bsp143I GATC 2 cut(s) 183, 257
BspACI CCGC 3 cut(s) 122, 125, 153
BspEI TCCGGA 2 cut(s) 180, 318
BspLI GGNNCC 5 cut(s) 6, 79, 323, 374, 436
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 372
BspTI CTTAAG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 73, 427
BssMI GATC 2 cut(s) 183, 257
BssT1I CCWWGG 1 cut(s) 427
Bst6I CTCTTC 1 cut(s) 344
BstAFI CTTAAG 1 cut(s) 199
BstAPI GCANNNNNTGC 1 cut(s) 394
BstF5I GGATG 3 cut(s) 110, 267, 399
BstKTI GATC 2 cut(s) 186, 260
BstMAI GTCTC 1 cut(s) 268
BstMBI GATC 2 cut(s) 183, 257
BstMWI GCNNNNNNNGC 2 cut(s) 394, 432
BstNSI RCATGY 2 cut(s) 144, 458
BstSLI GKGCMC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BtsCI GGATG 3 cut(s) 110, 267, 399
Csp6I GTAC 1 cut(s) 231
CviAII CATG 3 cut(s) 141, 389, 455
CviJI RGCY 6 cut(s) 207, 332, 426, 435, 500, 507
CviKI_1 RGCY 6 cut(s) 207, 332, 426, 435, 500, 507
CviQI GTAC 1 cut(s) 231
DpnI GATC 2 cut(s) 185, 259
DpnII GATC 2 cut(s) 183, 257
Eam1104I CTCTTC 1 cut(s) 344
EarI CTCTTC 1 cut(s) 344
EciI GGCGGA 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 427
Eco88I CYCGRG 2 cut(s) 333, 421
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 3 cut(s) 144, 392, 458
FaiI YATR 8 cut(s) 142, 192, 215, 282, 288, 390, 451, 456
FaqI GGGAC 1 cut(s) 423
FatI CATG 3 cut(s) 140, 388, 454
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 3 cut(s) 117, 254, 406
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 2 cut(s) 164, 428
GluI GCNGC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 44
HapII CCGG 2 cut(s) 181, 319
Hin1II CATG 3 cut(s) 144, 392, 458
HinfI GANTC 3 cut(s) 171, 194, 249
HpaII CCGG 2 cut(s) 181, 319
Hpy166II GTNNAC 1 cut(s) 170
Hpy188I TCNGA 5 cut(s) 54, 77, 272, 418, 463
Hpy188III TCNNGA 5 cut(s) 181, 253, 319, 335, 400
Hpy8I GTNNAC 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 394, 432
Hsp92II CATG 3 cut(s) 144, 392, 458
Kpn2I TCCGGA 2 cut(s) 180, 318
Kzo9I GATC 2 cut(s) 183, 257
LmnI GCTCC 3 cut(s) 155, 204, 440
LpnPI CCDG 4 cut(s) 54, 102, 194, 332
LweI GCATC 1 cut(s) 384
MaeI CTAG 2 cut(s) 164, 428
MalI GATC 2 cut(s) 185, 259
MboI GATC 2 cut(s) 183, 257
MboII GAAGA 1 cut(s) 361
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 377
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 2 cut(s) 441, 441
MnlI CCTC 9 cut(s) 58, 83, 95, 102, 286, 335, 345, 425, 473
MroI TCCGGA 2 cut(s) 180, 318
MseI TTAA 2 cut(s) 200, 356
MspCI CTTAAG 1 cut(s) 199
MspI CCGG 2 cut(s) 181, 319
MwoI GCNNNNNNNGC 2 cut(s) 394, 432
NdeII GATC 2 cut(s) 183, 257
NlaIII CATG 3 cut(s) 144, 392, 458
NlaIV GGNNCC 5 cut(s) 6, 79, 323, 374, 436
NspI RCATGY 2 cut(s) 144, 458
PaeR7I CTCGAG 1 cut(s) 333
PciI ACATGT 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 2 cut(s) 194, 249
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PscI ACATGT 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 40
PspN4I GGNNCC 5 cut(s) 6, 79, 323, 374, 436
PsuI RGATCY 1 cut(s) 257
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 200, 356
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 2 cut(s) 183, 257
SchI GAGTC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 377
SetI ASST 8 cut(s) 50, 75, 169, 209, 297, 327, 356, 502
SfaNI GCATC 1 cut(s) 384
Sfr274I CTCGAG 1 cut(s) 333
SlaI CTCGAG 1 cut(s) 333
SmlI CTYRAG 4 cut(s) 199, 326, 333, 398
SmoI CTYRAG 4 cut(s) 199, 326, 333, 398
SsiI CCGC 3 cut(s) 122, 125, 153
SspMI CTAG 2 cut(s) 164, 428
StyI CCWWGG 1 cut(s) 427
TaqI TCGA 2 cut(s) 334, 478
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 2 cut(s) 194, 249
Tru1I TTAA 2 cut(s) 200, 356
Tru9I TTAA 2 cut(s) 200, 356
TspDTI ATGAA 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 199
XceI RCATGY 2 cut(s) 144, 458
XcmI CCANNNNNNNNNTGG 1 cut(s) 23
XhoI CTCGAG 1 cut(s) 333
XmaJI CCTAGG 1 cut(s) 427
XspI CTAG 2 cut(s) 164, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.