Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 70 |
| AciI | CCGC | 1 cut(s) | 291 |
| AclWI | GGATC | 3 cut(s) | 50, 166, 176 |
| AcsI | RAATTY | 1 cut(s) | 330 |
| AfaI | GTAC | 1 cut(s) | 210 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 86 |
| AgsI | TTSAA | 1 cut(s) | 337 |
| AjnI | CCWGG | 1 cut(s) | 85 |
| AluBI | AGCT | 3 cut(s) | 131, 203, 214 |
| AluI | AGCT | 3 cut(s) | 131, 203, 214 |
| AlwI | GGATC | 3 cut(s) | 50, 166, 176 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 134, 206 |
| ApeKI | GCWGC | 1 cut(s) | 43 |
| ApoI | RAATTY | 1 cut(s) | 330 |
| AsuHPI | GGTGA | 2 cut(s) | 317, 329 |
| BanI | GGYRCC | 1 cut(s) | 70 |
| BbvI | GCAGC | 1 cut(s) | 55 |
| BccI | CCATC | 1 cut(s) | 21 |
| BciT130I | CCWGG | 1 cut(s) | 87 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BisI | GCNGC | 1 cut(s) | 44 |
| BlsI | GCNGC | 1 cut(s) | 45 |
| Bme1390I | CCNGG | 1 cut(s) | 87 |
| BmiI | GGNNCC | 1 cut(s) | 72 |
| BmrFI | CCNGG | 1 cut(s) | 87 |
| BmsI | GCATC | 1 cut(s) | 30 |
| BpmI | CTGGAG | 1 cut(s) | 111 |
| BsaBI | GATNNNNATC | 1 cut(s) | 163 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 86 |
| Bse8I | GATNNNNATC | 1 cut(s) | 163 |
| BseBI | CCWGG | 1 cut(s) | 87 |
| BseGI | GGATG | 2 cut(s) | 13, 139 |
| BseJI | GATNNNNATC | 1 cut(s) | 163 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 86 |
| BseMII | CTCAG | 1 cut(s) | 327 |
| BseXI | GCAGC | 1 cut(s) | 55 |
| BshNI | GGYRCC | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 86 |
| Bsp1407I | TGTACA | 1 cut(s) | 208 |
| Bsp143I | GATC | 3 cut(s) | 55, 158, 181 |
| BspACI | CCGC | 1 cut(s) | 291 |
| BspCNI | CTCAG | 1 cut(s) | 326 |
| BspLI | GGNNCC | 1 cut(s) | 72 |
| BspPI | GGATC | 3 cut(s) | 50, 166, 176 |
| BspT107I | GGYRCC | 1 cut(s) | 70 |
| BsrGI | TGTACA | 1 cut(s) | 208 |
| BssMI | GATC | 3 cut(s) | 55, 158, 181 |
| Bst2UI | CCWGG | 1 cut(s) | 87 |
| Bst4CI | ACNGT | 2 cut(s) | 262, 286 |
| BstAUI | TGTACA | 1 cut(s) | 208 |
| BstC8I | GCNNGC | 2 cut(s) | 69, 216 |
| BstDEI | CTNAG | 1 cut(s) | 313 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 84 |
| BstF5I | GGATG | 2 cut(s) | 13, 139 |
| BstKTI | GATC | 3 cut(s) | 58, 161, 184 |
| BstMBI | GATC | 3 cut(s) | 55, 158, 181 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 143, 200 |
| BstNI | CCWGG | 1 cut(s) | 87 |
| BstSCI | CCNGG | 1 cut(s) | 85 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstV1I | GCAGC | 1 cut(s) | 55 |
| BstX2I | RGATCY | 1 cut(s) | 55 |
| BstYI | RGATCY | 1 cut(s) | 55 |
| BtsCI | GGATG | 2 cut(s) | 13, 139 |
| Cac8I | GCNNGC | 2 cut(s) | 69, 216 |
| CaiI | CAGNNNCTG | 2 cut(s) | 134, 206 |
| CseI | GACGC | 1 cut(s) | 73 |
| Csp6I | GTAC | 1 cut(s) | 209 |
| CviAII | CATG | 1 cut(s) | 47 |
| CviJI | RGCY | 5 cut(s) | 90, 131, 203, 214, 244 |
| CviKI_1 | RGCY | 5 cut(s) | 90, 131, 203, 214, 244 |
| CviQI | GTAC | 1 cut(s) | 209 |
| DdeI | CTNAG | 1 cut(s) | 313 |
| DpnI | GATC | 3 cut(s) | 57, 160, 183 |
| DpnII | GATC | 3 cut(s) | 55, 158, 181 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 84 |
| EcoRII | CCWGG | 1 cut(s) | 85 |
| FaeI | CATG | 1 cut(s) | 50 |
| FatI | CATG | 1 cut(s) | 46 |
| FauNDI | CATATG | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 1 cut(s) | 44 |
| FokI | GGATG | 1 cut(s) | 126 |
| Fsp4HI | GCNGC | 1 cut(s) | 44 |
| GluI | GCNGC | 1 cut(s) | 44 |
| GsuI | CTGGAG | 1 cut(s) | 111 |
| HgaI | GACGC | 1 cut(s) | 73 |
| Hin1II | CATG | 1 cut(s) | 50 |
| HinfI | GANTC | 2 cut(s) | 4, 26 |
| HphI | GGTGA | 2 cut(s) | 317, 329 |
| Hpy188III | TCNNGA | 2 cut(s) | 53, 179 |
| HpyCH4III | ACNGT | 2 cut(s) | 262, 286 |
| HpyCH4V | TGCA | 2 cut(s) | 43, 194 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 143, 200 |
| HpyF3I | CTNAG | 1 cut(s) | 313 |
| Hsp92II | CATG | 1 cut(s) | 50 |
| Kzo9I | GATC | 3 cut(s) | 55, 158, 181 |
| LmnI | GCTCC | 4 cut(s) | 136, 208, 223, 229 |
| Lsp1109I | GCAGC | 1 cut(s) | 55 |
| LweI | GCATC | 1 cut(s) | 30 |
| MaeIII | GTNAC | 1 cut(s) | 317 |
| MalI | GATC | 3 cut(s) | 57, 160, 183 |
| MboI | GATC | 3 cut(s) | 55, 158, 181 |
| MflI | RGATCY | 1 cut(s) | 55 |
| MluCI | AATT | 2 cut(s) | 195, 330 |
| MlyI | GAGTC | 1 cut(s) | 35 |
| MnlI | CCTC | 1 cut(s) | 129 |
| MseI | TTAA | 1 cut(s) | 358 |
| MspA1I | CMGCKG | 1 cut(s) | 291 |
| MspR9I | CCNGG | 1 cut(s) | 87 |
| MvaI | CCWGG | 1 cut(s) | 87 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 143, 200 |
| NdeI | CATATG | 1 cut(s) | 154 |
| NdeII | GATC | 3 cut(s) | 55, 158, 181 |
| NlaIII | CATG | 1 cut(s) | 50 |
| NlaIV | GGNNCC | 1 cut(s) | 72 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| PfeI | GAWTC | 1 cut(s) | 4 |
| PkrI | GCNGC | 1 cut(s) | 45 |
| PleI | GAGTC | 1 cut(s) | 34 |
| PpsI | GAGTC | 1 cut(s) | 34 |
| Psp6I | CCWGG | 1 cut(s) | 85 |
| PspGI | CCWGG | 1 cut(s) | 85 |
| PspN4I | GGNNCC | 1 cut(s) | 72 |
| PstNI | CAGNNNCTG | 2 cut(s) | 134, 206 |
| PsuI | RGATCY | 1 cut(s) | 55 |
| RsaI | GTAC | 1 cut(s) | 210 |
| RsaNI | GTAC | 1 cut(s) | 209 |
| SaqAI | TTAA | 1 cut(s) | 358 |
| SatI | GCNGC | 1 cut(s) | 44 |
| Sau3AI | GATC | 3 cut(s) | 55, 158, 181 |
| SchI | GAGTC | 1 cut(s) | 35 |
| ScrFI | CCNGG | 1 cut(s) | 87 |
| SetI | ASST | 5 cut(s) | 133, 205, 216, 232, 319 |
| SfaNI | GCATC | 1 cut(s) | 30 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| Sse9I | AATT | 2 cut(s) | 195, 330 |
| SsiI | CCGC | 1 cut(s) | 291 |
| SspI | AATATT | 1 cut(s) | 340 |
| StyD4I | CCNGG | 1 cut(s) | 85 |
| TaaI | ACNGT | 2 cut(s) | 262, 286 |
| TaqI | TCGA | 1 cut(s) | 298 |
| TasI | AATT | 2 cut(s) | 195, 330 |
| TatI | WGTACW | 1 cut(s) | 208 |
| TfiI | GAWTC | 1 cut(s) | 4 |
| Tru1I | TTAA | 1 cut(s) | 358 |
| Tru9I | TTAA | 1 cut(s) | 358 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| TseI | GCWGC | 1 cut(s) | 43 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 84 |
| XapI | RAATTY | 1 cut(s) | 330 |