Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

35861683 .. 35862136

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAAGGCAATTCGGAACGTTCGAGTTGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGACCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCAGTACTACTTCCTTTGGCACATCGGGAGGACAACCTTTCATGGAACAACGAGGAGGAGATTAGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCACGGTGAGGACGTTCTTGGTAACCCGAAAACTACTTCCGAGGAAGGTAGCTCATACGGTTACCATTCCGGTGGCTCGGGCAATTACAACAGTGGCTCTCAAGTCTCTCTTGAGCTCAGCCTCAACCCATTCGGAGCCGCCGGCTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

121

Amino Acids

13.05

Weight (kDa)

5.79

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	68
AciI	CCGC	1 cut(s)	351
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	3 cut(s)	32, 45, 66
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	51, 105
AluBI	AGCT	3 cut(s)	264, 328, 362
AluI	AGCT	3 cut(s)	264, 328, 362
Alw21I	GWGCWC	2 cut(s)	216, 330
Alw26I	GTCTC	1 cut(s)	322
Alw44I	GTGCAC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	32, 45, 66
Ama87I	CYCGRG	1 cut(s)	289
ApaLI	GTGCAC	1 cut(s)	212
Asp700I	GAANNNNTTC	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	89, 230
AvaI	CYCGRG	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	216, 330
BccI	CCATC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	322
BisI	GCNGC	1 cut(s)	351
BlpI	GCTNAGC	2 cut(s)	329, 358
BlsI	GCNGC	1 cut(s)	352
BmcAI	AGTACT	1 cut(s)	120
BmeT110I	CYCGRG	1 cut(s)	289
BmiI	GGNNCC	2 cut(s)	39, 349
Bpu1102I	GCTNAGC	2 cut(s)	329, 358
BpuEI	CTTGAG	2 cut(s)	297, 344
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	1 cut(s)	116
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	116
BseRI	GAGGAG	3 cut(s)	84, 182, 185
BseSI	GKGCMC	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	216, 330
BsiHKCI	CYCGRG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	282, 354
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	289
Bsp1286I	GDGCHC	2 cut(s)	216, 330
Bsp143I	GATC	3 cut(s)	37, 58, 185
Bsp1720I	GCTNAGC	2 cut(s)	329, 358
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	39, 349
BspPI	GGATC	3 cut(s)	32, 45, 66
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	3 cut(s)	37, 58, 185
Bst4CI	ACNGT	3 cut(s)	218, 272, 305
Bst6I	CTCTTC	1 cut(s)	200
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	3 cut(s)	329, 358, 363
BstEII	GGTNACC	2 cut(s)	233, 272
BstKTI	GATC	3 cut(s)	40, 61, 188
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	3 cut(s)	37, 58, 185
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstPI	GGTNACC	2 cut(s)	233, 272
BstSLI	GKGCMC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	355
Cfr10I	RCCGGY	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	62, 156
CviJI	RGCY	8 cut(s)	264, 288, 309, 328, 333, 350, 357, 362
CviKI_1	RGCY	8 cut(s)	264, 288, 309, 328, 333, 350, 357, 362
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	3 cut(s)	329, 358, 363
DpnI	GATC	3 cut(s)	39, 60, 187
DpnII	GATC	3 cut(s)	37, 58, 185
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	289
Eco91I	GGTNACC	2 cut(s)	233, 272
EcoICRI	GAGCTC	1 cut(s)	328
EcoO65I	GGTNACC	2 cut(s)	233, 272
EcoT38I	GRGCYC	1 cut(s)	330
FaeI	CATG	2 cut(s)	65, 159
FaiI	YATR	5 cut(s)	63, 74, 87, 157, 268
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	2 cut(s)	61, 155
FblI	GTMKAC	1 cut(s)	68
Fnu4HI	GCNGC	1 cut(s)	351
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
HapII	CCGG	2 cut(s)	282, 354
Hin1II	CATG	2 cut(s)	65, 159
HincII	GTYRAC	2 cut(s)	69, 81
HindII	GTYRAC	2 cut(s)	69, 81
HpaII	CCGG	2 cut(s)	282, 354
HphI	GGTGA	2 cut(s)	89, 230
Hpy166II	GTNNAC	3 cut(s)	69, 81, 214
Hpy188I	TCNGA	3 cut(s)	15, 253, 347
Hpy188III	TCNNGA	2 cut(s)	140, 323
Hpy8I	GTNNAC	3 cut(s)	69, 81, 214
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	3 cut(s)	218, 272, 305
HpyCH4IV	ACGT	2 cut(s)	18, 225
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	3 cut(s)	329, 358, 363
HpySE526I	ACGT	2 cut(s)	18, 225
Hsp92II	CATG	2 cut(s)	65, 159
KroI	GCCGGC	1 cut(s)	353
KroNI	GCCGGC	1 cut(s)	355
Kzo9I	GATC	3 cut(s)	37, 58, 185
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	3 cut(s)	129, 166, 295
MaeII	ACGT	2 cut(s)	18, 225
MaeIII	GTNAC	2 cut(s)	233, 272
MalI	GATC	3 cut(s)	39, 60, 187
MboI	GATC	3 cut(s)	37, 58, 185
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	2 cut(s)	216, 330
MluCI	AATT	3 cut(s)	9, 51, 295
MnlI	CCTC	9 cut(s)	102, 105, 136, 160, 163, 209, 214, 247, 344
MroNI	GCCGGC	1 cut(s)	353
MroXI	GAANNNNTTC	1 cut(s)	194
MslI	CAYNNNNRTG	1 cut(s)	282
MspI	CCGG	2 cut(s)	282, 354
MwoI	GCNNNNNNNGC	1 cut(s)	359
NaeI	GCCGGC	1 cut(s)	355
NdeII	GATC	3 cut(s)	37, 58, 185
NgoMIV	GCCGGC	1 cut(s)	353
NlaIII	CATG	2 cut(s)	65, 159
NlaIV	GGNNCC	2 cut(s)	39, 349
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 222
PdiI	GCCGGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	352
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	18
PspEI	GGTNACC	2 cut(s)	233, 272
PspN4I	GGNNCC	2 cut(s)	39, 349
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	67
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	3 cut(s)	37, 58, 185
ScaI	AGTACT	1 cut(s)	120
SduI	GDGCHC	2 cut(s)	216, 330
SetI	ASST	8 cut(s)	21, 102, 153, 228, 262, 266, 330, 364
SmiMI	CAYNNNNRTG	1 cut(s)	282
SmlI	CTYRAG	2 cut(s)	312, 323
SmoI	CTYRAG	2 cut(s)	312, 323
Sse9I	AATT	3 cut(s)	9, 51, 295
SsiI	CCGC	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	218, 272, 305
TaiI	ACGT	2 cut(s)	21, 228
TaqI	TCGA	4 cut(s)	22, 44, 68, 188
TasI	AATT	3 cut(s)	9, 51, 295
TatI	WGTACW	1 cut(s)	118
TauI	GCSGC	1 cut(s)	353
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	2 cut(s)	17, 144
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	310
VneI	GTGCAC	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	68
XmnI	GAANNNNTTC	1 cut(s)	194
ZrmI	AGTACT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.