Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

53026035 .. 53026487

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTCGGACCCGCAAGTTCTACCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCATTAATACCATCGGTGCCGATGGATCTATCGATCTAGCTTTTGGGTCAAACGTCGACTATCATGTTGACCCAAATTCCACTTCACCCTTCAACAATAACATCGGTACTACCTCCTTCAAAGACAACAGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCACGTGAGGACATCCTTGGTAACCCGATGACTACTTCCGAGGAAGGTAGCGCATACGCTACCATTCGGTGGCTCGGGCAATTACAACGGTGGCTCTCAAGTCTCTCTCGAGCTCGGCCTCAATCCATTCGAGCCGCCGACTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

150

Amino Acids

16.13

Weight (kDa)

4.77

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	57, 438
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	4 cut(s)	40, 75, 88, 136
AcsI	RAATTY	1 cut(s)	178
AcvI	CACGTG	1 cut(s)	308
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	196, 223
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AluBI	AGCT	3 cut(s)	143, 416, 449
AluI	AGCT	3 cut(s)	143, 416, 449
Alw21I	GWGCWC	2 cut(s)	307, 418
Alw26I	GTCTC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	4 cut(s)	40, 75, 88, 136
Ama87I	CYCGRG	2 cut(s)	377, 411
AoxI	GGCC	1 cut(s)	419
ApaLI	GTGCAC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	178
AseI	ATTAAT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	180
AvaI	CYCGRG	2 cut(s)	377, 411
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	418
BbrPI	CACGTG	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	307, 418
BccI	CCATC	2 cut(s)	119, 122
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	140
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	2 cut(s)	377, 411
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	4 cut(s)	55, 82, 103, 121
BpuEI	CTTGAG	1 cut(s)	385
Bsa29I	ATCGAT	1 cut(s)	135
BsaAI	YACGTR	1 cut(s)	308
BsaJI	CCNNGG	3 cut(s)	246, 319, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	3 cut(s)	246, 319, 342
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseRI	GAGGAG	2 cut(s)	273, 276
BseSI	GKGCMC	1 cut(s)	307
BshFI	GGCC	1 cut(s)	421
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	307, 418
BsiHKCI	CYCGRG	2 cut(s)	377, 411
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	421
BsoBI	CYCGRG	2 cut(s)	377, 411
Bsp1286I	GDGCHC	2 cut(s)	307, 418
Bsp143I	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	2 cut(s)	57, 438
BspANI	GGCC	1 cut(s)	421
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	4 cut(s)	55, 82, 103, 121
BspPI	GGATC	4 cut(s)	40, 75, 88, 136
BspT107I	GGYRCC	1 cut(s)	119
BssECI	CCNNGG	3 cut(s)	246, 319, 342
BssMI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
BssT1I	CCWWGG	2 cut(s)	246, 319
Bst4CI	ACNGT	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	445, 450
BstDSI	CCRYGG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	8 cut(s)	35, 43, 83, 91, 131, 139, 268, 279
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstPI	GGTNACC	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	307
BstX2I	RGATCY	3 cut(s)	32, 80, 128
BstYI	RGATCY	3 cut(s)	32, 80, 128
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	421
BsuTUI	ATCGAT	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	315
CfoI	GCGC	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	2 cut(s)	167, 247
CviJI	RGCY	7 cut(s)	143, 376, 397, 416, 421, 437, 449
CviKI_1	RGCY	7 cut(s)	143, 376, 397, 416, 421, 437, 449
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	445, 450
DpnI	GATC	8 cut(s)	34, 42, 82, 90, 130, 138, 267, 278
DpnII	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	246, 319
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	416
Eco72I	CACGTG	1 cut(s)	308
Eco88I	CYCGRG	2 cut(s)	377, 411
Eco91I	GGTNACC	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	246, 319
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	2 cut(s)	246, 319
FaeI	CATG	2 cut(s)	170, 250
FaiI	YATR	3 cut(s)	168, 248, 358
FatI	CATG	2 cut(s)	166, 246
FauI	CCCGC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	438
FokI	GGATG	1 cut(s)	302
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	438
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	421
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	2 cut(s)	170, 250
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	2 cut(s)	160, 172
HindII	GTYRAC	2 cut(s)	160, 172
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	3 cut(s)	160, 172, 305
Hpy188I	TCNGA	3 cut(s)	15, 53, 343
Hpy188III	TCNNGA	2 cut(s)	38, 411
Hpy8I	GTNNAC	3 cut(s)	160, 172, 305
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	68, 202, 229, 252, 341
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	3 cut(s)	18, 156, 307
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	2 cut(s)	445, 450
HpySE526I	ACGT	3 cut(s)	18, 156, 307
Hsp92II	CATG	2 cut(s)	170, 250
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
LpnPI	CCDG	1 cut(s)	257
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	18, 156, 307
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	8 cut(s)	34, 42, 82, 90, 130, 138, 267, 278
MboI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
MboII	GAAGA	1 cut(s)	278
MflI	RGATCY	3 cut(s)	32, 80, 128
MhlI	GDGCHC	2 cut(s)	307, 418
MluCI	AATT	3 cut(s)	9, 178, 383
MnlI	CCTC	8 cut(s)	226, 227, 251, 254, 300, 304, 337, 432
MroXI	GAANNNNTTC	1 cut(s)	285
MseI	TTAA	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
NlaIII	CATG	2 cut(s)	170, 250
NlaIV	GGNNCC	4 cut(s)	55, 82, 103, 121
NmeAIII	GCCGAG	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	285
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	439
PmaCI	CACGTG	1 cut(s)	308
PmlI	CACGTG	1 cut(s)	308
Ppu21I	YACGTR	1 cut(s)	308
PshBI	ATTAAT	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	18
PspCI	CACGTG	1 cut(s)	308
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	55, 82, 103, 121
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	3 cut(s)	32, 80, 128
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	8 cut(s)	32, 40, 80, 88, 128, 136, 265, 276
Sau96I	GGNCC	1 cut(s)	53
SduI	GDGCHC	2 cut(s)	307, 418
Sfr274I	CTCGAG	1 cut(s)	411
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	2 cut(s)	400, 411
SmoI	CTYRAG	2 cut(s)	400, 411
Sse9I	AATT	3 cut(s)	9, 178, 383
SsiI	CCGC	2 cut(s)	57, 438
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	418
StyI	CCWWGG	2 cut(s)	246, 319
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	3 cut(s)	21, 159, 310
TaqI	TCGA	6 cut(s)	39, 135, 159, 279, 412, 433
TasI	AATT	3 cut(s)	9, 178, 383
TauI	GCSGC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TspDTI	ATGAA	2 cut(s)	17, 87
Van91I	CCANNNNNTGG	1 cut(s)	372
VneI	GTGCAC	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	53
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	1 cut(s)	178
XhoI	CTCGAG	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	285
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.