Rroxscaffold_7G00183290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Reverse (-)
22373136 .. 22373444
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00183290.1

Sequence Viewer

Length: 309 bp
ATGAAGGCATTTCGGAACGTCCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCTTCAAGTTCTACGGATGAAGGTGGATCCGTCGATTTGAACTTTGGTCCCACTGTTCCTACATGTACCGATGGATCCATCTATCTCGCTTTCGGGTCAAACGTCGACCATGCCGTCGACCCGAATTCCACTTCACCCTTCAATAATAACAACGGTACTACCTCCTTCGGCACAACGGGAGGACAACTTTCTATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCTCGTTTCCCGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.62

Weight (kDa)

4.3

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccI GTMKAC 2 cut(s) 159, 171
AciI CCGC 1 cut(s) 30
AclWI GGATC 5 cut(s) 40, 75, 88, 123, 136
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 2 cut(s) 121, 211
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 3 cut(s) 60, 94, 196
AlwI GGATC 5 cut(s) 40, 75, 88, 123, 136
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 53, 101
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 53, 101
BamHI GGATCC 2 cut(s) 80, 128
BccI CCATC 2 cut(s) 119, 140
BceAI ACGGC 1 cut(s) 152
BcnI CCSGG 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 53, 101
BmgT120I GGNCC 2 cut(s) 53, 101
BmiI GGNNCC 3 cut(s) 82, 103, 130
BmrFI CCNGG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 76
BseRI GAGGAG 2 cut(s) 273, 276
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
Bsp143I GATC 6 cut(s) 32, 40, 80, 128, 265, 276
BspACI CCGC 1 cut(s) 30
BspLI GGNNCC 3 cut(s) 82, 103, 130
BspPI GGATC 5 cut(s) 40, 75, 88, 123, 136
BssMI GATC 6 cut(s) 32, 40, 80, 128, 265, 276
Bst4CI ACNGT 2 cut(s) 109, 209
Bst6I CTCTTC 1 cut(s) 291
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 6 cut(s) 35, 43, 83, 131, 268, 279
BstMBI GATC 6 cut(s) 32, 40, 80, 128, 265, 276
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 21
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 53, 101
Csp6I GTAC 2 cut(s) 120, 210
CviAII CATG 2 cut(s) 117, 164
CviQI GTAC 2 cut(s) 120, 210
DpnI GATC 6 cut(s) 34, 42, 82, 130, 267, 278
DpnII GATC 6 cut(s) 32, 40, 80, 128, 265, 276
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
EciI GGCGGA 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 53, 101
EcoRI GAATTC 1 cut(s) 178
FaeI CATG 2 cut(s) 120, 167
FaiI YATR 4 cut(s) 118, 165, 248, 307
FaqI GGGAC 1 cut(s) 87
FatI CATG 2 cut(s) 116, 163
FblI GTMKAC 2 cut(s) 159, 171
FokI GGATG 1 cut(s) 83
HapII CCGG 1 cut(s) 22
Hin1II CATG 2 cut(s) 120, 167
HincII GTYRAC 2 cut(s) 160, 172
HindII GTYRAC 2 cut(s) 160, 172
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 160, 172
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 2 cut(s) 160, 172
Hpy99I CGWCG 3 cut(s) 89, 161, 173
HpyAV CCTTC 4 cut(s) 66, 68, 202, 229
HpyCH4III ACNGT 2 cut(s) 109, 209
HpyCH4IV ACGT 2 cut(s) 18, 156
HpyCH4V TGCA 1 cut(s) 305
HpySE526I ACGT 2 cut(s) 18, 156
Hsp92II CATG 2 cut(s) 120, 167
Kzo9I GATC 6 cut(s) 32, 40, 80, 128, 265, 276
LpnPI CCDG 2 cut(s) 35, 257
MaeII ACGT 2 cut(s) 18, 156
MalI GATC 6 cut(s) 34, 42, 82, 130, 267, 278
MboI GATC 6 cut(s) 32, 40, 80, 128, 265, 276
MboII GAAGA 1 cut(s) 278
MflI RGATCY 3 cut(s) 32, 80, 128
MluCI AATT 1 cut(s) 178
MnlI CCTC 5 cut(s) 226, 227, 251, 254, 300
MroXI GAANNNNTTC 1 cut(s) 285
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NdeII GATC 6 cut(s) 32, 40, 80, 128, 265, 276
NlaIII CATG 2 cut(s) 120, 167
NlaIV GGNNCC 3 cut(s) 82, 103, 130
NspI RCATGY 1 cut(s) 120
PciI ACATGT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 165
PdmI GAANNNNTTC 1 cut(s) 285
PscI ACATGT 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 82, 103, 130
PspPI GGNCC 2 cut(s) 53, 101
PsuI RGATCY 3 cut(s) 32, 80, 128
RsaI GTAC 2 cut(s) 121, 211
RsaNI GTAC 2 cut(s) 120, 210
SalI GTCGAC 2 cut(s) 158, 170
Sau3AI GATC 6 cut(s) 32, 40, 80, 128, 265, 276
Sau96I GGNCC 2 cut(s) 53, 101
ScrFI CCNGG 1 cut(s) 23
SetI ASST 5 cut(s) 21, 58, 79, 159, 218
SinI GGWCC 2 cut(s) 53, 101
Sse9I AATT 1 cut(s) 178
SsiI CCGC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 2 cut(s) 109, 209
TaiI ACGT 2 cut(s) 21, 159
TaqI TCGA 5 cut(s) 39, 87, 159, 171, 279
TasI AATT 1 cut(s) 178
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 2 cut(s) 73, 83
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 53, 101
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 120
XmiI GTMKAC 2 cut(s) 159, 171
XmnI GAANNNNTTC 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.