Rroxscaffold_1G00000420

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000483
Physical Location & Seq
Forward (+)
777096 .. 777452
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000420.1

Sequence Viewer

Length: 357 bp
ATGAAGGCATTTCGGAACGTCCGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCCATCGATTTGAACTTTGGTCCCACCTTTGTTCCTACAGTGCCGATGGATCCATCTATCTCACTTTCGGGTCAAACGTCGACCATCCCGTCGACCCGAATTCCACTTCACCCTTCAATAATAACAACAGTACTACCTCCTTCGGCACAACAAGAGGAAAACTTTCTATGGAACAACGAGGAGGAGATCGGCAGGAGATCGAAACTCTTCCTCTCGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCGATGACTACTTCGAGAGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.26

Weight (kDa)

6.73

Isoelectric Point (pI)

49.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 169
AccI GTMKAC 2 cut(s) 161, 173
AciI CCGC 2 cut(s) 29, 56
AclWI GGATC 5 cut(s) 39, 74, 87, 125, 138
AcsI RAATTY 1 cut(s) 180
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 28, 309
AgsI TTSAA 2 cut(s) 94, 198
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AlwI GGATC 5 cut(s) 39, 74, 87, 125, 138
ApoI RAATTY 1 cut(s) 180
Asp700I GAANNNNTTC 2 cut(s) 243, 287
AspS9I GGNCC 2 cut(s) 52, 101
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 2 cut(s) 52, 101
BamHI GGATCC 2 cut(s) 79, 130
BccI CCATC 4 cut(s) 92, 121, 142, 173
BfmI CTRYAG 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 213
Bme18I GGWCC 2 cut(s) 52, 101
BmgT120I GGNCC 2 cut(s) 52, 101
BmiI GGNNCC 4 cut(s) 54, 81, 103, 132
Bsa29I ATCGAT 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 309
BseCI ATCGAT 1 cut(s) 87
BseGI GGATG 2 cut(s) 75, 165
BseLI CCNNNNNNNGG 2 cut(s) 28, 309
BseRI GAGGAG 2 cut(s) 275, 278
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 28, 309
BsmFI GGGAC 1 cut(s) 87
Bsp143I GATC 6 cut(s) 31, 39, 79, 130, 267, 278
BspACI CCGC 2 cut(s) 29, 56
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 54, 81, 103, 132
BspPI GGATC 5 cut(s) 39, 74, 87, 125, 138
BssMI GATC 6 cut(s) 31, 39, 79, 130, 267, 278
Bst4CI ACNGT 2 cut(s) 121, 211
Bst6I CTCTTC 1 cut(s) 293
BstEII GGTNACC 1 cut(s) 326
BstF5I GGATG 2 cut(s) 75, 165
BstKTI GATC 6 cut(s) 34, 42, 82, 133, 270, 281
BstMBI GATC 6 cut(s) 31, 39, 79, 130, 267, 278
BstPI GGTNACC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 117
BstX2I RGATCY 3 cut(s) 31, 79, 130
BstYI RGATCY 3 cut(s) 31, 79, 130
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BtsCI GGATG 2 cut(s) 75, 165
BtsIMutI CAGTG 1 cut(s) 126
Cfr13I GGNCC 2 cut(s) 52, 101
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 212
CviQI GTAC 1 cut(s) 212
DpnI GATC 6 cut(s) 33, 41, 81, 132, 269, 280
DpnII GATC 6 cut(s) 31, 39, 79, 130, 267, 278
DrdI GACNNNNNNGTC 1 cut(s) 169
DseDI GACNNNNNNGTC 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
EciI GGCGGA 1 cut(s) 44
Eco47I GGWCC 2 cut(s) 52, 101
Eco91I GGTNACC 1 cut(s) 326
EcoO65I GGTNACC 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 180
FaiI YATR 2 cut(s) 250, 309
FaqI GGGAC 1 cut(s) 87
FauI CCCGC 1 cut(s) 63
FblI GTMKAC 2 cut(s) 161, 173
FokI GGATG 2 cut(s) 82, 152
HapII CCGG 1 cut(s) 22
HincII GTYRAC 2 cut(s) 162, 174
HindII GTYRAC 2 cut(s) 162, 174
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 162, 174
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 37, 345
Hpy8I GTNNAC 2 cut(s) 162, 174
Hpy99I CGWCG 2 cut(s) 163, 175
HpyAV CCTTC 4 cut(s) 67, 204, 231, 345
HpyCH4III ACNGT 2 cut(s) 121, 211
HpyCH4IV ACGT 2 cut(s) 18, 158
HpyCH4V TGCA 1 cut(s) 307
HpySE526I ACGT 2 cut(s) 18, 158
Kzo9I GATC 6 cut(s) 31, 39, 79, 130, 267, 278
LpnPI CCDG 2 cut(s) 35, 259
MaeII ACGT 2 cut(s) 18, 158
MaeIII GTNAC 1 cut(s) 326
MalI GATC 6 cut(s) 33, 41, 81, 132, 269, 280
MboI GATC 6 cut(s) 31, 39, 79, 130, 267, 278
MboII GAAGA 1 cut(s) 280
MflI RGATCY 3 cut(s) 31, 79, 130
MluCI AATT 1 cut(s) 180
MnlI CCTC 7 cut(s) 228, 229, 253, 256, 302, 307, 341
MroXI GAANNNNTTC 2 cut(s) 243, 287
MspI CCGG 1 cut(s) 22
NdeII GATC 6 cut(s) 31, 39, 79, 130, 267, 278
NlaIV GGNNCC 4 cut(s) 54, 81, 103, 132
PcsI WCGNNNNNNNCGW 2 cut(s) 155, 167
PdmI GAANNNNTTC 2 cut(s) 243, 287
PspEI GGTNACC 1 cut(s) 326
PspN4I GGNNCC 4 cut(s) 54, 81, 103, 132
PspPI GGNCC 2 cut(s) 52, 101
PsuI RGATCY 3 cut(s) 31, 79, 130
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SalI GTCGAC 2 cut(s) 160, 172
Sau3AI GATC 6 cut(s) 31, 39, 79, 130, 267, 278
Sau96I GGNCC 2 cut(s) 52, 101
ScaI AGTACT 1 cut(s) 213
SetI ASST 6 cut(s) 21, 78, 110, 161, 220, 356
SfcI CTRYAG 1 cut(s) 117
SinI GGWCC 2 cut(s) 52, 101
Sse9I AATT 1 cut(s) 180
SsiI CCGC 2 cut(s) 29, 56
TaaI ACNGT 2 cut(s) 121, 211
TaiI ACGT 2 cut(s) 21, 161
TaqI TCGA 6 cut(s) 38, 87, 161, 173, 281, 344
TasI AATT 1 cut(s) 180
TatI WGTACW 1 cut(s) 211
TscAI CASTG 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 17, 86
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 52, 101
XapI RAATTY 1 cut(s) 180
XmiI GTMKAC 2 cut(s) 161, 173
XmnI GAANNNNTTC 2 cut(s) 243, 287
ZrmI AGTACT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.