Rroxscaffold_5G00344280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000483
Physical Location & Seq
Forward (+)
14273663 .. 14274127
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344280.1

Sequence Viewer

Length: 465 bp
ATGAAGGCATTTCGGAACATTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGAAGAAGGTGGATCCATTGATCCGAACTTTGGTCCCACTGTTCCTACAGTGTGCCGATGGATCCATCTATCTAGCTTTTGGGTCAAACGTCGACCATCATGTTGACCCAAATTCCACTTCACCCTTCAACAATAACATCGTACTACCTCCTTCAGCACAACAGAGGACAACCTTCCATGGAACAACGAGGAGGAGGTCGGCGAGGAGATTGAAACTCTTCCTCTCGTTCCCCGTGCATAAAGAGGACATCCTTGGTAACCCGATGACTACTTCCGGGAAGGTAGCGCATACGGTTACCATCCCGGTGGCTCGGGCGATTACAATAGTGGCTCTCAAGTCTCTCTTGAGCTCAGCCTTAACCCATCCGGAGCCGTCGACTAAGCTTAGTATAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.72

Weight (kDa)

10.71

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 159, 443
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 1 cut(s) 57
AclWI GGATC 6 cut(s) 40, 74, 82, 87, 123, 136
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 196, 280
AjuI GAANNNNNNNTTGG 2 cut(s) 169, 201
AluBI AGCT 3 cut(s) 143, 417, 451
AluI AGCT 3 cut(s) 143, 417, 451
Alw21I GWGCWC 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 6 cut(s) 40, 74, 82, 87, 123, 136
Ama87I CYCGRG 1 cut(s) 378
Aor13HI TCCGGA 1 cut(s) 433
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 284
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 2 cut(s) 53, 100
AsuC2I CCSGG 2 cut(s) 343, 371
AsuHPI GGTGA 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 378
AvaII GGWCC 2 cut(s) 53, 100
BamHI GGATCC 2 cut(s) 79, 128
BanII GRGCYC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 419
BccI CCATC 5 cut(s) 119, 140, 171, 374, 438
BceAI ACGGC 1 cut(s) 424
BcnI CCSGG 2 cut(s) 343, 371
BcoDI GTCTC 1 cut(s) 411
BfaI CTAG 1 cut(s) 140
BfmI CTRYAG 1 cut(s) 113
BlpI GCTNAGC 1 cut(s) 418
Bme1390I CCNGG 2 cut(s) 343, 371
Bme18I GGWCC 2 cut(s) 53, 100
BmeT110I CYCGRG 1 cut(s) 378
BmgT120I GGNCC 2 cut(s) 53, 100
BmiI GGNNCC 5 cut(s) 55, 81, 102, 130, 438
BmrFI CCNGG 2 cut(s) 343, 371
Bpu1102I GCTNAGC 1 cut(s) 418
BpuEI CTTGAG 2 cut(s) 386, 433
BpuMI CCSGG 2 cut(s) 343, 371
BsaJI CCNNGG 2 cut(s) 244, 319
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 2 cut(s) 244, 319
BseGI GGATG 3 cut(s) 315, 366, 430
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 432
BseRI GAGGAG 3 cut(s) 271, 274, 286
BsiHKAI GWGCWC 1 cut(s) 419
BsiHKCI CYCGRG 1 cut(s) 378
BsiSI CCGG 3 cut(s) 342, 371, 434
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 86
BsoBI CYCGRG 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 419
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 5 cut(s) 32, 40, 79, 87, 128
Bsp1720I GCTNAGC 1 cut(s) 418
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 431
BspEI TCCGGA 1 cut(s) 433
BspLI GGNNCC 5 cut(s) 55, 81, 102, 130, 438
BspPI GGATC 6 cut(s) 40, 74, 82, 87, 123, 136
BssECI CCNNGG 2 cut(s) 244, 319
BssMI GATC 5 cut(s) 32, 40, 79, 87, 128
BssT1I CCWWGG 2 cut(s) 244, 319
Bst4CI ACNGT 3 cut(s) 108, 117, 361
Bst6I CTCTTC 1 cut(s) 290
BstDEI CTNAG 3 cut(s) 418, 447, 452
BstDSI CCRYGG 1 cut(s) 244
BstEII GGTNACC 2 cut(s) 323, 361
BstF5I GGATG 3 cut(s) 315, 366, 430
BstHHI GCGC 1 cut(s) 355
BstKTI GATC 5 cut(s) 35, 43, 82, 90, 131
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 5 cut(s) 32, 40, 79, 87, 128
BstPI GGTNACC 2 cut(s) 323, 361
BstSCI CCNGG 2 cut(s) 341, 369
BstSFI CTRYAG 1 cut(s) 113
BstX2I RGATCY 3 cut(s) 32, 79, 128
BstXI CCANNNNNNTGG 1 cut(s) 373
BstYI RGATCY 3 cut(s) 32, 79, 128
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 3 cut(s) 315, 366, 430
BtsIMutI CAGTG 2 cut(s) 104, 122
CfoI GCGC 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 53, 100
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 167, 245
CviJI RGCY 7 cut(s) 143, 377, 398, 417, 422, 439, 451
CviKI_1 RGCY 7 cut(s) 143, 377, 398, 417, 422, 439, 451
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 3 cut(s) 418, 447, 452
DpnI GATC 5 cut(s) 34, 42, 81, 89, 130
DpnII GATC 5 cut(s) 32, 40, 79, 87, 128
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 417
Eco130I CCWWGG 2 cut(s) 244, 319
Eco24I GRGCYC 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 53, 100
Eco53kI GAGCTC 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 378
Eco91I GGTNACC 2 cut(s) 323, 361
EcoICRI GAGCTC 1 cut(s) 417
EcoO65I GGTNACC 2 cut(s) 323, 361
EcoT14I CCWWGG 2 cut(s) 244, 319
EcoT38I GRGCYC 1 cut(s) 419
ErhI CCWWGG 2 cut(s) 244, 319
FaeI CATG 2 cut(s) 170, 248
FaiI YATR 5 cut(s) 168, 246, 306, 357, 458
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 86
FatI CATG 2 cut(s) 166, 244
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 2 cut(s) 159, 443
FokI GGATG 3 cut(s) 302, 353, 417
FriOI GRGCYC 1 cut(s) 419
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 354
HapII CCGG 3 cut(s) 342, 371, 434
HhaI GCGC 1 cut(s) 355
Hin1II CATG 2 cut(s) 170, 248
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HincII GTYRAC 3 cut(s) 160, 172, 444
HindII GTYRAC 3 cut(s) 160, 172, 444
HindIII AAGCTT 1 cut(s) 449
HpaII CCGG 3 cut(s) 342, 371, 434
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 160, 172, 444
Hpy188I TCNGA 2 cut(s) 15, 92
Hpy188III TCNNGA 3 cut(s) 38, 412, 434
Hpy8I GTNNAC 3 cut(s) 160, 172, 444
Hpy99I CGWCG 2 cut(s) 161, 445
HpyAV CCTTC 5 cut(s) 67, 202, 228, 250, 340
HpyCH4III ACNGT 3 cut(s) 108, 117, 361
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 304
HpyF3I CTNAG 3 cut(s) 418, 447, 452
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 170, 248
HspAI GCGC 1 cut(s) 353
Kpn2I TCCGGA 1 cut(s) 433
Kzo9I GATC 5 cut(s) 32, 40, 79, 87, 128
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 3 cut(s) 355, 384, 447
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 2 cut(s) 323, 361
MalI GATC 5 cut(s) 34, 42, 81, 89, 130
MboI GATC 5 cut(s) 32, 40, 79, 87, 128
MboII GAAGA 2 cut(s) 82, 277
MflI RGATCY 3 cut(s) 32, 79, 128
MhlI GDGCHC 1 cut(s) 419
MluCI AATT 1 cut(s) 178
MnlI CCTC 8 cut(s) 225, 225, 249, 252, 255, 264, 299, 304
MroI TCCGGA 1 cut(s) 433
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 371
MspI CCGG 3 cut(s) 342, 371, 434
MspR9I CCNGG 2 cut(s) 343, 371
NciI CCSGG 2 cut(s) 343, 371
NcoI CCATGG 1 cut(s) 244
NdeII GATC 5 cut(s) 32, 40, 79, 87, 128
NlaIII CATG 2 cut(s) 170, 248
NlaIV GGNNCC 5 cut(s) 55, 81, 102, 130, 438
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 419
PspEI GGTNACC 2 cut(s) 323, 361
PspN4I GGNNCC 5 cut(s) 55, 81, 102, 130, 438
PspPI GGNCC 2 cut(s) 53, 100
PsuI RGATCY 3 cut(s) 32, 79, 128
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
RseI CAYNNNNRTG 1 cut(s) 371
SacI GAGCTC 1 cut(s) 419
SalI GTCGAC 2 cut(s) 158, 442
SaqAI TTAA 1 cut(s) 425
Sau3AI GATC 5 cut(s) 32, 40, 79, 87, 128
Sau96I GGNCC 2 cut(s) 53, 100
ScrFI CCNGG 2 cut(s) 343, 371
SduI GDGCHC 1 cut(s) 419
SetI ASST 9 cut(s) 78, 145, 159, 217, 242, 266, 351, 419, 453
SfcI CTRYAG 1 cut(s) 113
SinI GGWCC 2 cut(s) 53, 100
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 2 cut(s) 401, 412
SmoI CTYRAG 2 cut(s) 401, 412
Sse9I AATT 1 cut(s) 178
SsiI CCGC 1 cut(s) 57
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 419
StyD4I CCNGG 2 cut(s) 341, 369
StyI CCWWGG 2 cut(s) 244, 319
TaaI ACNGT 3 cut(s) 108, 117, 361
TaiI ACGT 1 cut(s) 159
TaqI TCGA 4 cut(s) 22, 39, 159, 443
TasI AATT 1 cut(s) 178
Tru1I TTAA 1 cut(s) 425
Tru9I TTAA 1 cut(s) 425
TscAI CASTG 2 cut(s) 111, 122
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 111, 122
VpaK11BI GGWCC 2 cut(s) 53, 100
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 2 cut(s) 159, 443
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.