Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

9977428 .. 9977904

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATAAGGGCTATAAGCGTCAACTCCGGCGATTCAAGAGATCCGCCTCGGTCCGGCGATTTGGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGGGAGAGCCAACGGATGAAGGCATTTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGAGAAGAAGGTGGATCCATTGATCCGAACTTTGGTCCCACTTGTTCCTACGAGTCTTGATGGATCCATCTATCTAGCTTTTGGGTCAAACGTCGACCATCATGTTGACCCAAATTCCACTTCACCCTTCAACAATAACATCGGTACTACCTCCTTCGCACAACGGAGGACAACCTTCCATGGAACAACGAGGAGGAGGTCGGCGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCATAGAGAGGACATCCTTGGTAACCCGATGACTACTTCGGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

158

Amino Acids

17.63

Weight (kDa)

9.79

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	288
AciI	CCGC	3 cut(s)	44, 184, 398
AclI	AACGTT	1 cut(s)	145
AclWI	GGATC	7 cut(s)	35, 167, 203, 211, 216, 252, 265
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	2 cut(s)	53, 226
AgsI	TTSAA	2 cut(s)	36, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
AlwI	GGATC	7 cut(s)	35, 167, 203, 211, 216, 252, 265
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	307
Asp700I	GAANNNNTTC	2 cut(s)	85, 411
AspS9I	GGNCC	4 cut(s)	51, 64, 180, 229
AsuHPI	GGTGA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	3 cut(s)	51, 180, 229
BamHI	GGATCC	2 cut(s)	208, 257
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	3 cut(s)	248, 269, 300
BfaI	CTAG	1 cut(s)	269
Bme18I	GGWCC	3 cut(s)	51, 180, 229
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	51, 64, 180, 229
BmiI	GGNNCC	5 cut(s)	97, 182, 210, 231, 259
BpiI	GAAGAC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	47, 373, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 226
BseDI	CCNNGG	3 cut(s)	47, 373, 445
BseGI	GGATG	2 cut(s)	133, 441
BseLI	CCNNNNNNNGG	2 cut(s)	53, 226
BseRI	GAGGAG	2 cut(s)	400, 403
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	27, 54
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	2 cut(s)	53, 226
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	112
Bsp143I	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	3 cut(s)	44, 184, 398
BspANI	GGCC	1 cut(s)	66
BspLI	GGNNCC	5 cut(s)	97, 182, 210, 231, 259
BspPI	GGATC	7 cut(s)	35, 167, 203, 211, 216, 252, 265
BssECI	CCNNGG	3 cut(s)	47, 373, 445
BssMI	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
BssT1I	CCWWGG	2 cut(s)	373, 445
Bst6I	CTCTTC	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	373
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	133, 441
BstKTI	GATC	8 cut(s)	43, 71, 162, 170, 211, 219, 260, 405
BstMBI	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	63
BstPI	GGTNACC	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	4 cut(s)	40, 159, 208, 257
BstYI	RGATCY	4 cut(s)	40, 159, 208, 257
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	2 cut(s)	133, 441
Cfr13I	GGNCC	4 cut(s)	51, 64, 180, 229
CpoI	CGGWCCG	1 cut(s)	51
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	339
CspI	CGGWCCG	1 cut(s)	51
CviAII	CATG	2 cut(s)	296, 374
CviJI	RGCY	4 cut(s)	11, 66, 121, 272
CviKI_1	RGCY	4 cut(s)	11, 66, 121, 272
CviQI	GTAC	1 cut(s)	339
DpnI	GATC	8 cut(s)	42, 70, 161, 169, 210, 218, 259, 404
DpnII	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
DrdI	GACNNNNNNGTC	1 cut(s)	82
DseDI	GACNNNNNNGTC	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EciI	GGCGGA	2 cut(s)	33, 413
Eco130I	CCWWGG	2 cut(s)	373, 445
Eco47I	GGWCC	3 cut(s)	51, 180, 229
Eco88I	CYCGRG	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	449
EcoO65I	GGTNACC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	373, 445
ErhI	CCWWGG	2 cut(s)	373, 445
FaeI	CATG	2 cut(s)	299, 377
FaiI	YATR	4 cut(s)	14, 297, 375, 432
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	295, 373
FauI	CCCGC	1 cut(s)	191
FblI	GTMKAC	1 cut(s)	288
FokI	GGATG	2 cut(s)	140, 428
FspBI	CTAG	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	2 cut(s)	27, 54
HgaI	GACGC	1 cut(s)	7
Hin1II	CATG	2 cut(s)	299, 377
HincII	GTYRAC	3 cut(s)	22, 289, 301
HindII	GTYRAC	3 cut(s)	22, 289, 301
HinfI	GANTC	2 cut(s)	32, 247
HpaII	CCGG	2 cut(s)	27, 54
HphI	GGTGA	1 cut(s)	309
Hpy166II	GTNNAC	3 cut(s)	22, 289, 301
Hpy188I	TCNGA	3 cut(s)	100, 142, 221
Hpy188III	TCNNGA	5 cut(s)	36, 114, 165, 251, 468
Hpy8I	GTNNAC	3 cut(s)	22, 289, 301
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	6 cut(s)	125, 196, 331, 358, 379, 465
HpyCH4IV	ACGT	3 cut(s)	83, 145, 285
HpyCH4V	TGCA	1 cut(s)	430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	63
HpySE526I	ACGT	3 cut(s)	83, 145, 285
Hsp92II	CATG	2 cut(s)	299, 377
Kzo9I	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
LpnPI	CCDG	2 cut(s)	40, 67
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	3 cut(s)	83, 145, 285
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	8 cut(s)	42, 70, 161, 169, 210, 218, 259, 404
MboI	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
MboII	GAAGA	3 cut(s)	78, 211, 404
MflI	RGATCY	4 cut(s)	40, 159, 208, 257
MluCI	AATT	1 cut(s)	307
MlyI	GAGTC	1 cut(s)	256
MroXI	GAANNNNTTC	2 cut(s)	85, 411
MspI	CCGG	2 cut(s)	27, 54
MwoI	GCNNNNNNNGC	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
NlaIII	CATG	2 cut(s)	299, 377
NlaIV	GGNNCC	5 cut(s)	97, 182, 210, 231, 259
PdmI	GAANNNNTTC	2 cut(s)	85, 411
PfeI	GAWTC	1 cut(s)	32
Ple19I	CGATCG	1 cut(s)	71
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	145
PspEI	GGTNACC	1 cut(s)	449
PspN4I	GGNNCC	5 cut(s)	97, 182, 210, 231, 259
PspPI	GGNCC	4 cut(s)	51, 64, 180, 229
PsuI	RGATCY	4 cut(s)	40, 159, 208, 257
PvuI	CGATCG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
Rsr2I	CGGWCCG	1 cut(s)	51
RsrII	CGGWCCG	1 cut(s)	51
SalI	GTCGAC	1 cut(s)	287
Sau3AI	GATC	8 cut(s)	40, 68, 159, 167, 208, 216, 257, 402
Sau96I	GGNCC	4 cut(s)	51, 64, 180, 229
SchI	GAGTC	1 cut(s)	256
SinI	GGWCC	3 cut(s)	51, 180, 229
Sse9I	AATT	1 cut(s)	307
SsiI	CCGC	3 cut(s)	44, 184, 398
SspMI	CTAG	1 cut(s)	269
StyI	CCWWGG	2 cut(s)	373, 445
TaiI	ACGT	3 cut(s)	86, 148, 288
TaqI	TCGA	4 cut(s)	71, 166, 288, 405
TaqII	GACCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	32
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	2 cut(s)	140, 373
VpaK11BI	GGWCC	3 cut(s)	51, 180, 229
XapI	RAATTY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	288
XmnI	GAANNNNTTC	2 cut(s)	85, 411
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.