Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

22839722 .. 22840186

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAACCACGAACTCTTCAATTATTTGAGCCTCAAACCCAGCAACAAACGGAATTTCAAGGCCAGCAACCAACCGAGGAGGGAGGAAGCAACCAAACAGCCGGAAGTAGTGCCAATCCTCCCCTCGGGCAGCCTAATACCCGCCGGGCTCCCACACCACCTCAACTAAGGATTCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCCACTCCCGAGCAGATCCAAGAGATAAGCCTCAATGCGAGCGAGTTTGGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAAAACCTCAAATCCCGAGAGAGCCAACAGATGAAGGCATTTCGGAACGTCGGGTTGGCGGATCCCTCGATCTCAACTTTGGACCCGCAATTCCTACGGATGAAGGTGGATCCATCGCTCCGAACTTTGGTCCCACTGTTCCTACCGGTCTTGATAGATCCATCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

154

Amino Acids

17.41

Weight (kDa)

6.31

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	47 - 105	1.2e-06	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	278
AciI	CCGC	3 cut(s)	142, 353, 380
AclWI	GGATC	6 cut(s)	220, 350, 363, 398, 411, 446
AcsI	RAATTY	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	125, 421
AgeI	ACCGGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	20, 59
AjuI	GAANNNNNNNTTGG	2 cut(s)	332, 364
AlwI	GGATC	6 cut(s)	220, 350, 363, 398, 411, 446
Ama87I	CYCGRG	3 cut(s)	125, 218, 309
AoxI	GGCC	3 cut(s)	61, 181, 260
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	439
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	4 cut(s)	181, 260, 376, 424
AsuC2I	CCSGG	1 cut(s)	146
AvaI	CYCGRG	3 cut(s)	125, 218, 309
AvaII	GGWCC	2 cut(s)	376, 424
BamHI	GGATCC	2 cut(s)	355, 403
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	415, 463
BcnI	CCSGG	1 cut(s)	146
BfaI	CTAG	1 cut(s)	463
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
Bme1390I	CCNGG	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	376, 424
BmeT110I	CYCGRG	3 cut(s)	125, 218, 309
BmgT120I	GGNCC	4 cut(s)	181, 260, 376, 424
BmiI	GGNNCC	7 cut(s)	6, 150, 293, 357, 378, 405, 426
BmrFI	CCNGG	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	458
BsaJI	CCNNGG	2 cut(s)	75, 124
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 421
Bse118I	RCCGGY	1 cut(s)	439
BseCI	ATCGAT	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	75, 124
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	125, 421
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	63, 183, 262
BshTI	ACCGGT	1 cut(s)	439
BshVI	ATCGAT	1 cut(s)	458
BsiEI	CGRYCG	1 cut(s)	267
BsiHKCI	CYCGRG	3 cut(s)	125, 218, 309
BsiSI	CCGG	3 cut(s)	102, 145, 440
BslFI	GGGAC	2 cut(s)	195, 410
BslI	CCNNNNNNNGG	2 cut(s)	125, 421
BsmFI	GGGAC	2 cut(s)	195, 410
BsnI	GGCC	3 cut(s)	63, 183, 262
BsoBI	CYCGRG	3 cut(s)	125, 218, 309
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
BspACI	CCGC	3 cut(s)	142, 353, 380
BspANI	GGCC	3 cut(s)	63, 183, 262
BspDI	ATCGAT	1 cut(s)	458
BspLI	GGNNCC	7 cut(s)	6, 150, 293, 357, 378, 405, 426
BspPI	GGATC	6 cut(s)	220, 350, 363, 398, 411, 446
BsrFI	RCCGGY	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	75, 124
BssMI	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
Bst4CI	ACNGT	1 cut(s)	432
Bst6I	CTCTTC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	65, 250
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	399
BstKTI	GATC	7 cut(s)	228, 267, 358, 366, 406, 454, 462
BstMBI	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
BstMCI	CGRYCG	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	274
BstX2I	RGATCY	4 cut(s)	225, 355, 403, 451
BstYI	RGATCY	4 cut(s)	225, 355, 403, 451
Bsu15I	ATCGAT	1 cut(s)	458
BsuRI	GGCC	3 cut(s)	63, 183, 262
BsuTUI	ATCGAT	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	399
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	2 cut(s)	65, 250
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	4 cut(s)	181, 260, 376, 424
ClaI	ATCGAT	1 cut(s)	458
CseI	GACGC	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	439
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	7 cut(s)	227, 266, 357, 365, 405, 453, 461
DpnII	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
DrdI	GACNNNNNNGTC	1 cut(s)	278
DseDI	GACNNNNNNGTC	1 cut(s)	278
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
EciI	GGCGGA	1 cut(s)	368
Eco24I	GRGCYC	1 cut(s)	151
Eco47I	GGWCC	2 cut(s)	376, 424
Eco88I	CYCGRG	3 cut(s)	125, 218, 309
EcoO109I	RGGNCCY	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	151
FaiI	YATR	1 cut(s)	192
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FaqI	GGGAC	2 cut(s)	195, 410
FauI	CCCGC	2 cut(s)	149, 387
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	1 cut(s)	406
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	463
GluI	GCNGC	1 cut(s)	131
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	3 cut(s)	63, 183, 262
HapII	CCGG	3 cut(s)	102, 145, 440
HgaI	GACGC	1 cut(s)	197
HinfI	GANTC	1 cut(s)	172
HpaII	CCGG	3 cut(s)	102, 145, 440
Hpy188I	TCNGA	2 cut(s)	339, 416
Hpy188III	TCNNGA	3 cut(s)	218, 309, 445
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	2 cut(s)	322, 391
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4IV	ACGT	2 cut(s)	279, 342
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	279, 342
Kzo9I	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
LmnI	GCTCC	2 cut(s)	154, 417
LpnPI	CCDG	5 cut(s)	53, 77, 115, 158, 453
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	463
MaeII	ACGT	2 cut(s)	279, 342
MalI	GATC	7 cut(s)	227, 266, 357, 365, 405, 453, 461
MboI	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
MboII	GAAGA	2 cut(s)	8, 274
MflI	RGATCY	4 cut(s)	225, 355, 403, 451
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	3 cut(s)	20, 53, 383
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	204
MspI	CCGG	3 cut(s)	102, 145, 440
MspR9I	CCNGG	1 cut(s)	146
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
NlaIV	GGNNCC	7 cut(s)	6, 150, 293, 357, 378, 405, 426
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	172
PinAI	ACCGGT	1 cut(s)	439
PkrI	GCNGC	1 cut(s)	132
Ple19I	CGATCG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	7 cut(s)	6, 150, 293, 357, 378, 405, 426
PspPI	GGNCC	4 cut(s)	181, 260, 376, 424
PsuI	RGATCY	4 cut(s)	225, 355, 403, 451
PvuI	CGATCG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	7 cut(s)	225, 264, 355, 363, 403, 451, 459
Sau96I	GGNCC	4 cut(s)	181, 260, 376, 424
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	5 cut(s)	163, 282, 303, 345, 402
SinI	GGWCC	2 cut(s)	376, 424
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	20, 53, 383
SsiI	CCGC	3 cut(s)	142, 353, 380
SspMI	CTAG	1 cut(s)	463
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	432
TaiI	ACGT	2 cut(s)	282, 345
TaqI	TCGA	3 cut(s)	267, 362, 458
TasI	AATT	3 cut(s)	20, 53, 383
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	1 cut(s)	130
TspDTI	ATGAA	2 cut(s)	341, 410
TspGWI	ACGGA	2 cut(s)	65, 406
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	376, 424
XapI	RAATTY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.