Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

8710969 .. 8711700

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00225490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAACCACGAACTCTGCGGCTATTGGAGCTTCAAACCCAGCAACAAACGGAATTTCAAGCCCCGGCAACCAACCGAGGAGGGAGGAAACAACCAAGCAGCGGGAGTAGTGCCAATATGCCTATCGGGCGACACGGTACCCGGTGGACTCCCACACCGCCTCAACTAAGAATTCTCAAGGGCCTTTACTATGATAAGGGCTTTAAGCGTCCAACTCCCGAGCGATTCAAGAGATGCCTCGATCGAAGCGGTTTGGGCCGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAGAGCCAACGGATGAAGGCATTTCGGAACGTTCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTGCGATGAAGGTGGATCCATTGATGCGAACTTTGGTCCCACTTGTTCCTACGGAGGCGATGGATCCATCTATCTAGCTTTTGGGTCAAACGTCGACCATCATGTTGACCCAAATTCCACTTCACCCTTCAATAATAACAACGGTACTACCTCCTTCGGCACGACGGAGGACAACCTTCCATGGAACAACGAGGAGGAGATCGGCGAGGAGATCGAAACTCTTCCTCTGTTCCCGAGCACCGTGAAGACATCATTGGTAACACGAAGACTACATCCGAGGAAGGTAGCGCATTTGGTTACTATTCGGTGGCTCGGGCGGTTACAACGGTGGCTCTCCTGTTTCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

243

Amino Acids

27.43

Weight (kDa)

9.64

Isoelectric Point (pI)

67.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	7 cut(s)	19, 102, 158, 249, 349, 376, 700
AclI	AACGTT	1 cut(s)	337
AclWI	GGATC	5 cut(s)	359, 393, 406, 441, 454
AcsI	RAATTY	3 cut(s)	53, 171, 496
AfaI	GTAC	2 cut(s)	139, 529
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	35, 59, 229, 514
AjuI	GAANNNNNNNTTGG	4 cut(s)	487, 519, 620, 652
AluBI	AGCT	2 cut(s)	31, 461
AluI	AGCT	2 cut(s)	31, 461
Alw21I	GWGCWC	1 cut(s)	623
AlwI	GGATC	5 cut(s)	359, 393, 406, 441, 454
Ama87I	CYCGRG	4 cut(s)	218, 304, 616, 695
AoxI	GGCC	2 cut(s)	181, 256
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	3 cut(s)	53, 171, 496
Asp700I	GAANNNNTTC	2 cut(s)	277, 603
Asp718I	GGTACC	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	4 cut(s)	181, 256, 372, 419
AsuC2I	CCSGG	2 cut(s)	65, 142
AsuHPI	GGTGA	1 cut(s)	498
AvaI	CYCGRG	4 cut(s)	218, 304, 616, 695
AvaII	GGWCC	2 cut(s)	372, 419
BamHI	GGATCC	2 cut(s)	398, 446
BanI	GGYRCC	1 cut(s)	137
BbsI	GAAGAC	3 cut(s)	270, 635, 655
Bbv12I	GWGCWC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	3 cut(s)	437, 458, 489
BcnI	CCSGG	2 cut(s)	65, 142
BfaI	CTAG	1 cut(s)	458
BglI	GCCNNNNNGGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	20, 100
BlsI	GCNGC	2 cut(s)	21, 101
Bme1390I	CCNGG	2 cut(s)	65, 142
Bme18I	GGWCC	2 cut(s)	372, 419
BmeT110I	CYCGRG	4 cut(s)	218, 304, 616, 695
BmgT120I	GGNCC	4 cut(s)	181, 256, 372, 419
BmiI	GGNNCC	7 cut(s)	6, 139, 289, 374, 400, 421, 448
BmrFI	CCNGG	2 cut(s)	65, 142
BmsI	GCATC	2 cut(s)	224, 397
BpiI	GAAGAC	3 cut(s)	270, 635, 655
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	2 cut(s)	65, 142
BsaJI	CCNNGG	4 cut(s)	63, 76, 563, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
BseDI	CCNNGG	4 cut(s)	63, 76, 563, 659
BseGI	GGATG	2 cut(s)	325, 655
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseRI	GAGGAG	4 cut(s)	93, 590, 593, 605
BseXI	GCAGC	1 cut(s)	111
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	2 cut(s)	244, 263
BshFI	GGCC	2 cut(s)	183, 258
BshNI	GGYRCC	1 cut(s)	137
BsiEI	CGRYCG	2 cut(s)	244, 263
BsiHKAI	GWGCWC	1 cut(s)	623
BsiHKCI	CYCGRG	4 cut(s)	218, 304, 616, 695
BsiSI	CCGG	2 cut(s)	65, 142
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	183, 258
BsoBI	CYCGRG	4 cut(s)	218, 304, 616, 695
Bsp1286I	GDGCHC	1 cut(s)	623
Bsp143I	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	7 cut(s)	19, 102, 158, 249, 349, 376, 700
BspANI	GGCC	2 cut(s)	183, 258
BspLI	GGNNCC	7 cut(s)	6, 139, 289, 374, 400, 421, 448
BspPI	GGATC	5 cut(s)	359, 393, 406, 441, 454
BspT107I	GGYRCC	1 cut(s)	137
BssECI	CCNNGG	4 cut(s)	63, 76, 563, 659
BssMI	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
BssT1I	CCWWGG	1 cut(s)	563
Bst4CI	ACNGT	4 cut(s)	137, 527, 625, 711
Bst6I	CTCTTC	1 cut(s)	609
BstAPI	GCANNNNNTGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	167
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	2 cut(s)	325, 655
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	8 cut(s)	244, 263, 354, 362, 401, 449, 585, 597
BstMBI	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
BstMCI	CGRYCG	2 cut(s)	244, 263
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 127, 255, 384
BstSCI	CCNGG	2 cut(s)	63, 140
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	3 cut(s)	270, 635, 655
BstX2I	RGATCY	3 cut(s)	351, 398, 446
BstYI	RGATCY	3 cut(s)	351, 398, 446
BsuRI	GGCC	2 cut(s)	183, 258
BtgI	CCRYGG	1 cut(s)	563
BtgZI	GCGATG	2 cut(s)	402, 456
BtsCI	GGATG	2 cut(s)	325, 655
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	4 cut(s)	181, 256, 372, 419
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	138, 528
CviAII	CATG	2 cut(s)	485, 564
CviQI	GTAC	2 cut(s)	138, 528
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	8 cut(s)	243, 262, 353, 361, 400, 448, 584, 596
DpnII	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	372, 419
Eco88I	CYCGRG	4 cut(s)	218, 304, 616, 695
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	2 cut(s)	488, 567
FaiI	YATR	4 cut(s)	119, 192, 486, 565
FalI	AAGNNNNNCTT	2 cut(s)	262, 294
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	484, 563
FauI	CCCGC	2 cut(s)	95, 383
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	2 cut(s)	20, 100
FokI	GGATG	2 cut(s)	332, 642
Fsp4HI	GCNGC	2 cut(s)	20, 100
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	2 cut(s)	20, 100
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	2 cut(s)	183, 258
HapII	CCGG	2 cut(s)	65, 142
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	2 cut(s)	488, 567
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	2 cut(s)	478, 490
HindII	GTYRAC	2 cut(s)	478, 490
HinfI	GANTC	2 cut(s)	148, 225
HpaII	CCGG	2 cut(s)	65, 142
HphI	GGTGA	1 cut(s)	498
Hpy166II	GTNNAC	3 cut(s)	147, 478, 490
Hpy188I	TCNGA	3 cut(s)	292, 334, 660
Hpy188III	TCNNGA	7 cut(s)	218, 229, 304, 306, 357, 616, 729
Hpy8I	GTNNAC	3 cut(s)	147, 478, 490
Hpy99I	CGWCG	2 cut(s)	479, 550
HpyAV	CCTTC	6 cut(s)	317, 386, 520, 547, 569, 658
HpyCH4III	ACNGT	4 cut(s)	137, 527, 625, 711
HpyCH4IV	ACGT	3 cut(s)	275, 337, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 127, 255, 384
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	3 cut(s)	275, 337, 474
Hsp92II	CATG	2 cut(s)	488, 567
HspAI	GCGC	1 cut(s)	671
KpnI	GGTACC	1 cut(s)	141
Kzo9I	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	3 cut(s)	53, 78, 155
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	224, 397
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	3 cut(s)	275, 337, 474
MaeIII	GTNAC	3 cut(s)	640, 679, 702
MalI	GATC	8 cut(s)	243, 262, 353, 361, 400, 448, 584, 596
MboI	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
MboII	GAAGA	4 cut(s)	270, 596, 640, 660
MflI	RGATCY	3 cut(s)	351, 398, 446
MhlI	GDGCHC	1 cut(s)	623
MluCI	AATT	3 cut(s)	53, 171, 496
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	236
MroXI	GAANNNNTTC	2 cut(s)	277, 603
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	102
MspI	CCGG	2 cut(s)	65, 142
MspR9I	CCNGG	2 cut(s)	65, 142
MwoI	GCNNNNNNNGC	4 cut(s)	28, 127, 255, 384
NciI	CCSGG	2 cut(s)	65, 142
NcoI	CCATGG	1 cut(s)	563
NdeII	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
NlaIII	CATG	2 cut(s)	488, 567
NlaIV	GGNNCC	7 cut(s)	6, 139, 289, 374, 400, 421, 448
PaeR7I	CTCGAG	1 cut(s)	304
PdmI	GAANNNNTTC	2 cut(s)	277, 603
PfeI	GAWTC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	21, 101
Ple19I	CGATCG	2 cut(s)	244, 263
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Psp1406I	AACGTT	1 cut(s)	337
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	7 cut(s)	6, 139, 289, 374, 400, 421, 448
PspPI	GGNCC	4 cut(s)	181, 256, 372, 419
PsuI	RGATCY	3 cut(s)	351, 398, 446
PvuI	CGATCG	2 cut(s)	244, 263
RsaI	GTAC	2 cut(s)	139, 529
RsaNI	GTAC	2 cut(s)	138, 528
SalI	GTCGAC	1 cut(s)	476
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	20, 100
Sau3AI	GATC	8 cut(s)	241, 260, 351, 359, 398, 446, 582, 594
Sau96I	GGNCC	4 cut(s)	181, 256, 372, 419
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	65, 142
SduI	GDGCHC	1 cut(s)	623
SfaNI	GCATC	2 cut(s)	224, 397
Sfr274I	CTCGAG	1 cut(s)	304
SinI	GGWCC	2 cut(s)	372, 419
SlaI	CTCGAG	1 cut(s)	304
SmlI	CTYRAG	2 cut(s)	176, 304
SmoI	CTYRAG	2 cut(s)	176, 304
Sse9I	AATT	3 cut(s)	53, 171, 496
SsiI	CCGC	7 cut(s)	19, 102, 158, 249, 349, 376, 700
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	63, 140
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	4 cut(s)	137, 527, 625, 711
TaiI	ACGT	3 cut(s)	278, 340, 477
TaqI	TCGA	7 cut(s)	240, 244, 263, 305, 358, 477, 597
TasI	AATT	3 cut(s)	53, 171, 496
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	336, 405
TspGWI	ACGGA	4 cut(s)	65, 332, 450, 563
VpaK11BI	GGWCC	2 cut(s)	372, 419
XapI	RAATTY	3 cut(s)	53, 171, 496
XhoI	CTCGAG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	2 cut(s)	277, 603
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.