Rroxscaffold_4G00331530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000483
Physical Location & Seq
Reverse (-)
65510607 .. 65510912
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331530.1

Sequence Viewer

Length: 306 bp
ATGAAGGCATTTCGGAAAGTCCGGGTTGGCGGATCTCTCGACCTCAACTTTGGACCCGCAAGTTCTGCGGATGAAGGTGGATCCATCGCTCCGAACTTTGGTTCCACCGATCCAATAGGTGCCGACGGATCCGTCGATCTATCTTTTGGGTCAAACGTCAACTATCATGTTGACCCATATTCCACTTCACCTTTCAACAACAACAACGTACTACCTCCTTCGGCACATCGGAGGTCAACCATCCATGGAACAAAGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCCGTTCCCCGTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.63

Weight (kDa)

10.13

Isoelectric Point (pI)

54.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 119
AciI CCGC 3 cut(s) 30, 57, 68
AclWI GGATC 6 cut(s) 40, 75, 88, 104, 123, 136
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 196
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AlwI GGATC 6 cut(s) 40, 75, 88, 104, 123, 136
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
Asp700I GAANNNNTTC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 1 cut(s) 53
BamHI GGATCC 2 cut(s) 80, 128
BanI GGYRCC 1 cut(s) 119
BccI CCATC 2 cut(s) 92, 248
BcnI CCSGG 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 5 cut(s) 55, 82, 103, 121, 130
BmrFI CCNGG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 2 cut(s) 76, 240
BseLI CCNNNNNNNGG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 271, 274
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 98
Bsp143I GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 3 cut(s) 30, 57, 68
BspLI GGNNCC 5 cut(s) 55, 82, 103, 121, 130
BspPI GGATC 6 cut(s) 40, 75, 88, 104, 123, 136
BspT107I GGYRCC 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
BssT1I CCWWGG 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 2 cut(s) 76, 240
BstKTI GATC 7 cut(s) 35, 83, 112, 131, 139, 266, 277
BstMBI GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 21
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
BtgI CCRYGG 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 2 cut(s) 76, 240
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 209
CviAII CATG 2 cut(s) 167, 245
CviQI GTAC 1 cut(s) 209
DpnI GATC 7 cut(s) 34, 82, 111, 130, 138, 265, 276
DpnII GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 244
FaeI CATG 2 cut(s) 170, 248
FaiI YATR 4 cut(s) 168, 178, 246, 304
FatI CATG 2 cut(s) 166, 244
FauI CCCGC 1 cut(s) 64
FokI GGATG 2 cut(s) 83, 227
HapII CCGG 1 cut(s) 22
Hin1II CATG 2 cut(s) 170, 248
HincII GTYRAC 3 cut(s) 160, 172, 237
HindII GTYRAC 3 cut(s) 160, 172, 237
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 160, 172, 237
Hpy188I TCNGA 3 cut(s) 15, 93, 231
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 160, 172, 237
Hpy99I CGWCG 2 cut(s) 128, 137
HpyAV CCTTC 2 cut(s) 68, 228
HpyCH4IV ACGT 2 cut(s) 156, 207
HpyCH4V TGCA 1 cut(s) 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpySE526I ACGT 2 cut(s) 156, 207
Hsp92II CATG 2 cut(s) 170, 248
Kzo9I GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 2 cut(s) 35, 255
MaeII ACGT 2 cut(s) 156, 207
MalI GATC 7 cut(s) 34, 82, 111, 130, 138, 265, 276
MboI GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
MboII GAAGA 1 cut(s) 276
MflI RGATCY 3 cut(s) 32, 80, 128
MnlI CCTC 6 cut(s) 53, 225, 225, 249, 252, 298
MroXI GAANNNNTTC 1 cut(s) 283
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 244
NdeII GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
NlaIII CATG 2 cut(s) 170, 248
NlaIV GGNNCC 5 cut(s) 55, 82, 103, 121, 130
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PdmI GAANNNNTTC 1 cut(s) 283
PspN4I GGNNCC 5 cut(s) 55, 82, 103, 121, 130
PspPI GGNCC 1 cut(s) 53
PsuI RGATCY 3 cut(s) 32, 80, 128
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
Sau3AI GATC 7 cut(s) 32, 80, 109, 128, 136, 263, 274
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 23
SetI ASST 8 cut(s) 45, 79, 121, 159, 193, 210, 217, 236
SgeI CNNG 8 cut(s) 34, 35, 50, 68, 72, 179, 257, 282
SinI GGWCC 1 cut(s) 53
SsiI CCGC 3 cut(s) 30, 57, 68
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 244
TaiI ACGT 2 cut(s) 159, 210
TaqI TCGA 3 cut(s) 39, 135, 277
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 3 cut(s) 121, 141, 280
VpaK11BI GGWCC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.