Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Reverse (-)

5876514 .. 5877029

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00390590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCACGTCGAGCAGCCAAATACTCGGTGGACTCCCACACCGCCTCAACTAAGAATCCTCAAGAGCCTTTACTATTATAAGGGTTTTAAGCGTCCAACTCCGGAGCGAGATTCAAGAGATCCGCCTCGATCCGAGCGATTTGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCAAAACCTCAAATCCCGAGAAAGCCGGCAGATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTTGTTCTACCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCACCGATCCTACAGTCTTGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCCGTACTATTTCCTTTGGCACAACAGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCGGGAGATCGAAACTCTTCCTCTGTTCCCCATGCACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

171

Amino Acids

19.37

Weight (kDa)

10.07

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	78
AasI	GACNNNNNNGTC	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	4 cut(s)	41, 122, 264, 476
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	9 cut(s)	113, 123, 247, 282, 295, 311, 329, 342, 363
AcoI	YGGCCR	1 cut(s)	366
AfaI	GTAC	1 cut(s)	417
AgsI	TTSAA	3 cut(s)	114, 348, 402
AjiI	CACGTC	1 cut(s)	7
AlwI	GGATC	9 cut(s)	113, 123, 247, 282, 295, 311, 329, 342, 363
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	13
Asp700I	GAANNNNTTC	2 cut(s)	164, 490
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	260
BamHI	GGATCC	2 cut(s)	287, 334
BbsI	GAAGAC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
Bme18I	GGWCC	1 cut(s)	260
BmeT110I	CYCGRG	1 cut(s)	192
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	5 cut(s)	176, 262, 289, 310, 336
BpiI	GAAGAC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	44
BsaWI	WCCGGW	1 cut(s)	100
Bse118I	RCCGGY	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	100
BseRI	GAGGAG	3 cut(s)	381, 478, 481
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	368
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	101, 202
BsnI	GGCC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	100
BspACI	CCGC	4 cut(s)	41, 122, 264, 476
BspANI	GGCC	1 cut(s)	368
BspEI	TCCGGA	1 cut(s)	100
BspLI	GGNNCC	5 cut(s)	176, 262, 289, 310, 336
BspPI	GGATC	9 cut(s)	113, 123, 247, 282, 295, 311, 329, 342, 363
BsrFI	RCCGGY	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	201
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 142
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	4 cut(s)	118, 239, 287, 334
BstYI	RGATCY	4 cut(s)	118, 239, 287, 334
BsuRI	GGCC	1 cut(s)	368
BtrI	CACGTC	1 cut(s)	7
Cac8I	GCNNGC	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	3 cut(s)	359, 452, 506
CviJI	RGCY	4 cut(s)	16, 66, 201, 368
CviKI_1	RGCY	4 cut(s)	16, 66, 201, 368
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	1 cut(s)	50
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
EciI	GGCGGA	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	192
FaeI	CATG	3 cut(s)	362, 455, 509
FaiI	YATR	6 cut(s)	78, 360, 371, 384, 453, 507
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	3 cut(s)	358, 451, 505
FauI	CCCGC	2 cut(s)	271, 469
Fnu4HI	GCNGC	1 cut(s)	14
Fsp4HI	GCNGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	2 cut(s)	101, 202
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	362, 455, 509
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	3 cut(s)	31, 54, 110
HpaII	CCGG	2 cut(s)	101, 202
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	30, 378
Hpy188I	TCNGA	2 cut(s)	133, 222
Hpy188III	TCNNGA	6 cut(s)	61, 101, 114, 192, 245, 328
Hpy8I	GTNNAC	2 cut(s)	30, 378
Hpy99I	CGWCG	2 cut(s)	11, 343
HpyAV	CCTTC	2 cut(s)	205, 275
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	3 cut(s)	6, 162, 225
HpyCH4V	TGCA	2 cut(s)	4, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 142
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	3 cut(s)	6, 162, 225
Hsp92II	CATG	3 cut(s)	362, 455, 509
Kpn2I	TCCGGA	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	201
KroNI	GCCGGC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	114, 215
Lsp1109I	GCAGC	1 cut(s)	25
MaeII	ACGT	3 cut(s)	6, 162, 225
MboII	GAAGA	2 cut(s)	157, 483
MflI	RGATCY	4 cut(s)	118, 239, 287, 334
MluCI	AATT	2 cut(s)	216, 348
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	119
MroI	TCCGGA	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	201
MroXI	GAANNNNTTC	2 cut(s)	164, 490
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	476
MspI	CCGG	2 cut(s)	101, 202
MwoI	GCNNNNNNNGC	2 cut(s)	10, 142
NaeI	GCCGGC	1 cut(s)	203
NgoMIV	GCCGGC	1 cut(s)	201
NlaIII	CATG	3 cut(s)	362, 455, 509
NlaIV	GGNNCC	5 cut(s)	176, 262, 289, 310, 336
PcsI	WCGNNNNNNNCGW	1 cut(s)	133
PdiI	GCCGGC	1 cut(s)	203
PdmI	GAANNNNTTC	2 cut(s)	164, 490
PfeI	GAWTC	2 cut(s)	54, 110
PkrI	GCNGC	1 cut(s)	15
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
PsiI	TTATAA	1 cut(s)	78
Psp1406I	AACGTT	1 cut(s)	225
PspN4I	GGNNCC	5 cut(s)	176, 262, 289, 310, 336
PspPI	GGNCC	1 cut(s)	260
PsuI	RGATCY	4 cut(s)	118, 239, 287, 334
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	25
SetI	ASST	7 cut(s)	9, 165, 186, 228, 286, 399, 449
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	216, 348
SsiI	CCGC	4 cut(s)	41, 122, 264, 476
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	3 cut(s)	9, 165, 228
TaqI	TCGA	6 cut(s)	9, 127, 150, 246, 341, 484
TasI	AATT	2 cut(s)	216, 348
TfiI	GAWTC	2 cut(s)	54, 110
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	224, 294, 440
TspGWI	ACGGA	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XmnI	GAANNNNTTC	2 cut(s)	164, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.