Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

4684613 .. 4685206

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGATAAGGGTTTTAAGCGTCCAACTCCGGAGCGATTCAAGAGATCCGCCTCGGTCGCGGCGTTTGGGCGGATCGACGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAAAGCCGGCGGATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTTGTTCTGCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCACCGATCCTACAGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCAAATTCCTCCTCACCTTTCAACACTAATACCCGTACTATTTCTTTTGGCACAACGGGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCGAGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCACGGTGAGGACGTCCTTGGTAACCCGAAGACTACTTTTGAGGAAGGTAGCGCATCTTGTTACTATTCGGTGGCTCGGGCGATTACAACGATGGCTCTCAAGTCTCTCTTGAGCTCGGCCTCAACCCATCCGGAGCCGCCGACTTGGCTTAGTATAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

197

Amino Acids

21.7

Weight (kDa)

4.89

Isoelectric Point (pI)

61.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AatII	GACGTC	1 cut(s)	447
AccII	CGCG	1 cut(s)	58
AccIII	TCCGGA	2 cut(s)	27, 562
AciI	CCGC	6 cut(s)	47, 58, 69, 128, 187, 569
AclI	AACGTT	1 cut(s)	148
AclWI	GGATC	9 cut(s)	38, 79, 170, 204, 217, 233, 251, 264, 285
AcoI	YGGCCR	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	39, 270, 324
AluBI	AGCT	1 cut(s)	546
AluI	AGCT	1 cut(s)	546
Alw21I	GWGCWC	2 cut(s)	435, 548
Alw26I	GTCTC	1 cut(s)	540
Alw44I	GTGCAC	1 cut(s)	431
AlwI	GGATC	9 cut(s)	38, 79, 170, 204, 217, 233, 251, 264, 285
Ama87I	CYCGRG	2 cut(s)	115, 507
Aor13HI	TCCGGA	2 cut(s)	27, 562
AoxI	GGCC	2 cut(s)	288, 549
ApaLI	GTGCAC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	2 cut(s)	88, 414
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	308, 449
AvaI	CYCGRG	2 cut(s)	115, 507
AvaII	GGWCC	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	435
BamHI	GGATCC	2 cut(s)	209, 256
BanII	GRGCYC	1 cut(s)	548
BbsI	GAAGAC	2 cut(s)	81, 467
Bbv12I	GWGCWC	2 cut(s)	435, 548
BccI	CCATC	3 cut(s)	247, 517, 567
BcoDI	GTCTC	1 cut(s)	540
BfmI	CTRYAG	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	577
BisI	GCNGC	2 cut(s)	59, 569
BlsI	GCNGC	2 cut(s)	60, 570
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	2 cut(s)	115, 507
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	6 cut(s)	100, 185, 211, 232, 258, 567
BmsI	GCATC	1 cut(s)	494
BpiI	GAAGAC	2 cut(s)	81, 467
BpuEI	CTTGAG	2 cut(s)	515, 562
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	50, 448
BsaWI	WCCGGW	2 cut(s)	27, 562
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse118I	RCCGGY	1 cut(s)	124
BseAI	TCCGGA	2 cut(s)	27, 562
BseDI	CCNNGG	2 cut(s)	50, 448
BseGI	GGATG	2 cut(s)	136, 559
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseRI	GAGGAG	4 cut(s)	303, 401, 404, 416
BseSI	GKGCMC	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	290, 551
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	2 cut(s)	435, 548
BsiHKCI	CYCGRG	2 cut(s)	115, 507
BsiSI	CCGG	3 cut(s)	28, 125, 563
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	1 cut(s)	540
BsnI	GGCC	2 cut(s)	290, 551
BsoBI	CYCGRG	2 cut(s)	115, 507
Bsp1286I	GDGCHC	2 cut(s)	435, 548
Bsp13I	TCCGGA	2 cut(s)	27, 562
BspACI	CCGC	6 cut(s)	47, 58, 69, 128, 187, 569
BspANI	GGCC	2 cut(s)	290, 551
BspEI	TCCGGA	2 cut(s)	27, 562
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	6 cut(s)	100, 185, 211, 232, 258, 567
BspPI	GGATC	9 cut(s)	38, 79, 170, 204, 217, 233, 251, 264, 285
BsrFI	RCCGGY	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	50, 448
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	247, 437
Bst6I	CTCTTC	1 cut(s)	420
BstACI	GRCGYC	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	581
BstEII	GGTNACC	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	136, 559
BstFNI	CGCG	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	485
BstMAI	GTCTC	1 cut(s)	540
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 195, 577
BstPI	GGTNACC	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	435
BstUI	CGCG	1 cut(s)	58
BstV2I	GAAGAC	2 cut(s)	81, 467
BstX2I	RGATCY	4 cut(s)	43, 162, 209, 256
BstYI	RGATCY	4 cut(s)	43, 162, 209, 256
BsuRI	GGCC	2 cut(s)	290, 551
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	136, 559
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	126
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	183
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	281, 375
CviJI	RGCY	8 cut(s)	124, 290, 506, 527, 546, 551, 568, 580
CviKI_1	RGCY	8 cut(s)	124, 290, 506, 527, 546, 551, 568, 580
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	1 cut(s)	581
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
EciI	GGCGGA	3 cut(s)	36, 84, 143
Ecl136II	GAGCTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	546
Eco88I	CYCGRG	2 cut(s)	115, 507
Eco91I	GGTNACC	1 cut(s)	452
EcoICRI	GAGCTC	1 cut(s)	546
EcoO65I	GGTNACC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	284, 378
FaiI	YATR	4 cut(s)	282, 293, 376, 587
FalI	AAGNNNNNCTT	4 cut(s)	73, 105, 524, 556
FatI	CATG	2 cut(s)	280, 374
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	59, 569
FokI	GGATG	2 cut(s)	143, 546
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	2 cut(s)	59, 569
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	59, 569
HaeIII	GGCC	2 cut(s)	290, 551
HapII	CCGG	3 cut(s)	28, 125, 563
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	485
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	284, 378
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	35
HpaII	CCGG	3 cut(s)	28, 125, 563
HphI	GGTGA	2 cut(s)	308, 449
Hpy166II	GTNNAC	2 cut(s)	300, 433
Hpy188I	TCNGA	2 cut(s)	103, 145
Hpy188III	TCNNGA	7 cut(s)	28, 39, 115, 117, 168, 541, 563
Hpy8I	GTNNAC	2 cut(s)	300, 433
Hpy99I	CGWCG	2 cut(s)	79, 265
HpyAV	CCTTC	3 cut(s)	128, 197, 470
HpyCH4III	ACNGT	2 cut(s)	247, 437
HpyCH4IV	ACGT	3 cut(s)	86, 148, 444
HpyCH4V	TGCA	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 195, 577
HpyF3I	CTNAG	1 cut(s)	581
HpySE526I	ACGT	3 cut(s)	86, 148, 444
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	284, 378
HspAI	GCGC	1 cut(s)	483
Kpn2I	TCCGGA	2 cut(s)	27, 562
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	30, 565
LpnPI	CCDG	3 cut(s)	41, 138, 576
LweI	GCATC	1 cut(s)	494
MaeII	ACGT	3 cut(s)	86, 148, 444
MaeIII	GTNAC	2 cut(s)	452, 491
MboII	GAAGA	3 cut(s)	81, 407, 472
MflI	RGATCY	4 cut(s)	43, 162, 209, 256
MhlI	GDGCHC	2 cut(s)	435, 548
MluCI	AATT	3 cut(s)	139, 270, 306
MmeI	TCCRAC	1 cut(s)	46
MroI	TCCGGA	2 cut(s)	27, 562
MroNI	GCCGGC	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	88, 414
MseI	TTAA	1 cut(s)	14
MspI	CCGG	3 cut(s)	28, 125, 563
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	55, 195, 577
NaeI	GCCGGC	1 cut(s)	126
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	284, 378
NlaIV	GGNNCC	6 cut(s)	100, 185, 211, 232, 258, 567
NmeAIII	GCCGAG	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	3 cut(s)	58, 83, 441
PdiI	GCCGGC	1 cut(s)	126
PdmI	GAANNNNTTC	2 cut(s)	88, 414
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	2 cut(s)	60, 570
Psp124BI	GAGCTC	1 cut(s)	548
Psp1406I	AACGTT	1 cut(s)	148
PspEI	GGTNACC	1 cut(s)	452
PspN4I	GGNNCC	6 cut(s)	100, 185, 211, 232, 258, 567
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	4 cut(s)	43, 162, 209, 256
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SacI	GAGCTC	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	2 cut(s)	59, 569
Sau96I	GGNCC	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	435, 548
SetI	ASST	9 cut(s)	89, 109, 151, 208, 321, 372, 447, 481, 548
SfaNI	GCATC	1 cut(s)	494
SfcI	CTRYAG	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	115
SmlI	CTYRAG	3 cut(s)	115, 530, 541
SmoI	CTYRAG	3 cut(s)	115, 530, 541
Sse9I	AATT	3 cut(s)	139, 270, 306
SsiI	CCGC	6 cut(s)	47, 58, 69, 128, 187, 569
SstI	GAGCTC	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	247, 437
TaiI	ACGT	3 cut(s)	89, 151, 447
TaqI	TCGA	5 cut(s)	74, 116, 169, 263, 408
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	139, 270, 306
TauI	GCSGC	2 cut(s)	61, 571
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	252
TspDTI	ATGAA	3 cut(s)	147, 216, 363
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	1 cut(s)	252
VneI	GTGCAC	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	306
XhoI	CTCGAG	1 cut(s)	115
XmnI	GAANNNNTTC	2 cut(s)	88, 414
ZraI	GACGTC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.