Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

24539052 .. 24539824

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00102390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAACCACGAACTGCGGCTAATGGAGCTTCAAACCCGGCAACAAATGGAACTACAAGCCCGGCAACCAGCGAGGAGGGAGGAAGCAACCAAGCAGCCGGAAGTAATGCTAATACGCACATCGGGCGACCTAATACCCGGTGGACTCCCACATCGCCTCAACTAAGAATCCTCGAGGGCCTTTACTATGACAAGGGTTTTAAGCGCCCAACTCCAAAGCGATTCAAGAGATGCGCCTCAATACGAGCGGACAACCTTCCATGGAACAACGAGGAGGAGATCGGCGGGAGATCGAAACTCTTCCTCTGTTCCCCGTGCACGGTGAGGACGTCCTTGGTAACCCGAAAACTACTTCCGAGGAAGGTAGCGCATACGGTTACCATTCCGGTGGCTCGGGCAATTACAACGGTGGCTCTCAAGTCTCTCGAGCTCGGCCTCGACCCGTTCGGAGCCGCCGACTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

155

Amino Acids

16.66

Weight (kDa)

10.02

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	332
AbsI	CCTCGAGG	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	248
AciI	CCGC	4 cut(s)	17, 248, 285, 453
AcyI	GRCGYC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	319
AgsI	TTSAA	2 cut(s)	33, 226
AluBI	AGCT	3 cut(s)	29, 430, 464
AluI	AGCT	3 cut(s)	29, 430, 464
Alw21I	GWGCWC	2 cut(s)	320, 432
Alw26I	GTCTC	1 cut(s)	426
Alw44I	GTGCAC	1 cut(s)	316
Ama87I	CYCGRG	3 cut(s)	173, 393, 425
AoxI	GGCC	2 cut(s)	178, 433
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	299
AspLEI	GCGC	3 cut(s)	207, 236, 370
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	3 cut(s)	38, 62, 139
AsuHPI	GGTGA	1 cut(s)	334
AvaI	CYCGRG	3 cut(s)	173, 393, 425
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	320, 432
BbvI	GCAGC	1 cut(s)	107
BcnI	CCSGG	3 cut(s)	38, 62, 139
BcoDI	GTCTC	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	208
BisI	GCNGC	3 cut(s)	18, 96, 453
BlsI	GCNGC	3 cut(s)	19, 97, 454
Bme1390I	CCNGG	3 cut(s)	38, 62, 139
BmeT110I	CYCGRG	3 cut(s)	173, 393, 425
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	6, 451
BmrFI	CCNGG	3 cut(s)	38, 62, 139
BmsI	GCATC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	3 cut(s)	38, 62, 139
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	260, 333, 356
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseDI	CCNNGG	3 cut(s)	260, 333, 356
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseRI	GAGGAG	3 cut(s)	89, 287, 290
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	107
BshFI	GGCC	2 cut(s)	180, 435
BsiHKAI	GWGCWC	2 cut(s)	320, 432
BsiHKCI	CYCGRG	3 cut(s)	173, 393, 425
BsiSI	CCGG	5 cut(s)	38, 62, 99, 139, 386
BslI	CCNNNNNNNGG	1 cut(s)	319
BsmAI	GTCTC	1 cut(s)	426
BsnI	GGCC	2 cut(s)	180, 435
BsoBI	CYCGRG	3 cut(s)	173, 393, 425
Bsp1286I	GDGCHC	2 cut(s)	320, 432
Bsp143I	GATC	2 cut(s)	279, 290
Bsp19I	CCATGG	1 cut(s)	260
BspACI	CCGC	4 cut(s)	17, 248, 285, 453
BspANI	GGCC	2 cut(s)	180, 435
BspLI	GGNNCC	2 cut(s)	6, 451
BsrBI	CCGCTC	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	260, 333, 356
BssMI	GATC	2 cut(s)	279, 290
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	2 cut(s)	260, 333
Bst4CI	ACNGT	3 cut(s)	322, 376, 409
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	329
BstDEI	CTNAG	3 cut(s)	164, 460, 465
BstDSI	CCRYGG	1 cut(s)	260
BstEII	GGTNACC	2 cut(s)	337, 376
BstH2I	RGCGCY	1 cut(s)	208
BstHHI	GCGC	3 cut(s)	207, 236, 370
BstKTI	GATC	2 cut(s)	282, 293
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	2 cut(s)	279, 290
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 124, 461
BstPI	GGTNACC	2 cut(s)	337, 376
BstSCI	CCNGG	3 cut(s)	36, 60, 137
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	107
BstXI	CCANNNNNNTGG	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	180, 435
BtgI	CCRYGG	1 cut(s)	260
BtgZI	GCGATG	1 cut(s)	138
CfoI	GCGC	3 cut(s)	207, 236, 370
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	1 cut(s)	261
DdeI	CTNAG	3 cut(s)	164, 460, 465
DpnI	GATC	2 cut(s)	281, 292
DpnII	GATC	2 cut(s)	279, 290
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	2 cut(s)	260, 333
Eco24I	GRGCYC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	430
Eco88I	CYCGRG	3 cut(s)	173, 393, 425
Eco91I	GGTNACC	2 cut(s)	337, 376
EcoICRI	GAGCTC	1 cut(s)	430
EcoO109I	RGGNCCY	1 cut(s)	178
EcoO65I	GGTNACC	2 cut(s)	337, 376
EcoT14I	CCWWGG	2 cut(s)	260, 333
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	2 cut(s)	260, 333
FaeI	CATG	1 cut(s)	264
FaiI	YATR	3 cut(s)	189, 262, 372
FatI	CATG	1 cut(s)	260
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	18, 96, 453
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	18, 96, 453
GlaI	GCGC	3 cut(s)	206, 235, 369
GluI	GCNGC	3 cut(s)	18, 96, 453
HaeII	RGCGCY	1 cut(s)	208
HaeIII	GGCC	2 cut(s)	180, 435
HapII	CCGG	5 cut(s)	38, 62, 99, 139, 386
HhaI	GCGC	3 cut(s)	207, 236, 370
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	1 cut(s)	264
Hin6I	GCGC	3 cut(s)	205, 234, 368
HinP1I	GCGC	3 cut(s)	205, 234, 368
HinfI	GANTC	3 cut(s)	145, 168, 222
HpaII	CCGG	5 cut(s)	38, 62, 99, 139, 386
HphI	GGTGA	1 cut(s)	334
Hpy166II	GTNNAC	2 cut(s)	144, 318
Hpy188I	TCNGA	2 cut(s)	357, 449
Hpy188III	TCNNGA	2 cut(s)	226, 425
Hpy8I	GTNNAC	2 cut(s)	144, 318
HpyAV	CCTTC	2 cut(s)	266, 355
HpyCH4III	ACNGT	3 cut(s)	322, 376, 409
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 124, 461
HpyF3I	CTNAG	3 cut(s)	164, 460, 465
HpySE526I	ACGT	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	1 cut(s)	264
HspAI	GCGC	3 cut(s)	205, 234, 368
Kzo9I	GATC	2 cut(s)	279, 290
LmnI	GCTCC	2 cut(s)	26, 449
LpnPI	CCDG	6 cut(s)	51, 75, 82, 112, 152, 399
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	1 cut(s)	221
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	337, 376
MalI	GATC	2 cut(s)	281, 292
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	2 cut(s)	279, 290
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	320, 432
MluCI	AATT	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	299
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	386
MspI	CCGG	5 cut(s)	38, 62, 99, 139, 386
MspR9I	CCNGG	3 cut(s)	38, 62, 139
MwoI	GCNNNNNNNGC	3 cut(s)	26, 124, 461
NciI	CCSGG	3 cut(s)	38, 62, 139
NcoI	CCATGG	1 cut(s)	260
NdeII	GATC	2 cut(s)	279, 290
NlaIII	CATG	1 cut(s)	264
NlaIV	GGNNCC	2 cut(s)	6, 451
NmeAIII	GCCGAG	1 cut(s)	411
PaeR7I	CTCGAG	2 cut(s)	173, 425
PcsI	WCGNNNNNNNCGW	2 cut(s)	326, 453
PdmI	GAANNNNTTC	1 cut(s)	299
PfeI	GAWTC	2 cut(s)	168, 222
PkrI	GCNGC	3 cut(s)	19, 97, 454
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	432
PspEI	GGTNACC	2 cut(s)	337, 376
PspN4I	GGNNCC	2 cut(s)	6, 451
PspPI	GGNCC	1 cut(s)	178
PspXI	VCTCGAGB	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	18, 96, 453
Sau3AI	GATC	2 cut(s)	279, 290
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	3 cut(s)	38, 62, 139
SduI	GDGCHC	2 cut(s)	320, 432
SetI	ASST	7 cut(s)	31, 133, 258, 332, 366, 432, 466
SfaNI	GCATC	1 cut(s)	221
Sfr274I	CTCGAG	2 cut(s)	173, 425
SlaI	CTCGAG	2 cut(s)	173, 425
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	3 cut(s)	173, 416, 425
SmoI	CTYRAG	3 cut(s)	173, 416, 425
Sse9I	AATT	1 cut(s)	399
SsiI	CCGC	4 cut(s)	17, 248, 285, 453
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	3 cut(s)	36, 60, 137
StyI	CCWWGG	2 cut(s)	260, 333
TaaI	ACNGT	3 cut(s)	322, 376, 409
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	4 cut(s)	174, 293, 426, 438
TasI	AATT	1 cut(s)	399
TauI	GCSGC	2 cut(s)	20, 455
TfiI	GAWTC	2 cut(s)	168, 222
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseI	GCWGC	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	316
XhoI	CTCGAG	2 cut(s)	173, 425
XmnI	GAANNNNTTC	1 cut(s)	299
ZraI	GACGTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.