Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

3804150 .. 3804563

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00389750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAACCACGAACTCGCAACTATTGGAGCTTCAAACCCAGCAACAAATGGAATTACAAGCCCAAAGAACCAGCCGGGGAGGAGGAAGCAACCAAGCAGCGGGGAGTAGTGCCAATATGCCTGTCGAGGGCAGCCAAATACTCGGTGGACTCCCACACGCCTCAACTAAGAATCCTCAAGAGCCTTTACTATGATAAGGGTTTTAAGCGTCCAACTCCGGAGCGATTCAAGAGATCCGCCTCCGTCCGGCGGTTTGGGCGGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGGAACCTCAAATCTCGAGAAAGCCGGCGGATGAAGGCAATTCGGAACGTTCGGGTTGGTGGATTTCTCGATCTCAACTTTGGACCCGCTTGTTCTGCGATGAAGGTGGATCCATTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

137

Amino Acids

16.13

Weight (kDa)

10.51

Isoelectric Point (pI)

58.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	275
AccIII	TCCGGA	2 cut(s)	217, 291
AciI	CCGC	6 cut(s)	100, 237, 250, 259, 319, 378
AclI	AACGTT	1 cut(s)	339
AclWI	GGATC	4 cut(s)	228, 269, 395, 408
AfiI	CCNNNNNNNGG	4 cut(s)	99, 127, 246, 249
AgsI	TTSAA	2 cut(s)	34, 229
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
AlwI	GGATC	4 cut(s)	228, 269, 395, 408
Ama87I	CYCGRG	1 cut(s)	306
Aor13HI	TCCGGA	2 cut(s)	217, 291
ApeKI	GCWGC	2 cut(s)	97, 131
Asp700I	GAANNNNTTC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	374
AsuC2I	CCSGG	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	400
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	109, 143
BcnI	CCSGG	1 cut(s)	76
BisI	GCNGC	2 cut(s)	98, 132
BlsI	GCNGC	2 cut(s)	99, 133
Bme1390I	CCNGG	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	5 cut(s)	6, 290, 296, 376, 402
BmrFI	CCNGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	76
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	2 cut(s)	217, 291
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 127, 246, 249
Bse118I	RCCGGY	1 cut(s)	315
BseAI	TCCGGA	2 cut(s)	217, 291
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	99, 127, 246, 249
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	109, 143
BseYI	CCCAGC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	306
BsiSI	CCGG	5 cut(s)	75, 218, 247, 292, 316
BslI	CCNNNNNNNGG	4 cut(s)	99, 127, 246, 249
BsoBI	CYCGRG	1 cut(s)	306
Bsp13I	TCCGGA	2 cut(s)	217, 291
Bsp143I	GATC	5 cut(s)	233, 261, 361, 400, 408
BspACI	CCGC	6 cut(s)	100, 237, 250, 259, 319, 378
BspEI	TCCGGA	2 cut(s)	217, 291
BspLI	GGNNCC	5 cut(s)	6, 290, 296, 376, 402
BspPI	GGATC	4 cut(s)	228, 269, 395, 408
BsrFI	RCCGGY	1 cut(s)	315
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	5 cut(s)	233, 261, 361, 400, 408
BstC8I	GCNNGC	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	5 cut(s)	236, 264, 364, 403, 411
BstMBI	GATC	5 cut(s)	233, 261, 361, 400, 408
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 386
BstSCI	CCNGG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	109, 143
BstV2I	GAAGAC	1 cut(s)	271
BstX2I	RGATCY	2 cut(s)	233, 400
BstYI	RGATCY	2 cut(s)	233, 400
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	317
Cfr10I	RCCGGY	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	374
CseI	GACGC	1 cut(s)	197
CviJI	RGCY	6 cut(s)	30, 61, 74, 134, 183, 315
CviKI_1	RGCY	6 cut(s)	30, 61, 74, 134, 183, 315
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	5 cut(s)	235, 263, 363, 402, 410
DpnII	GATC	5 cut(s)	233, 261, 361, 400, 408
DrdI	GACNNNNNNGTC	1 cut(s)	275
DseDI	GACNNNNNNGTC	1 cut(s)	275
EciI	GGCGGA	3 cut(s)	226, 274, 334
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	306
FaiI	YATR	2 cut(s)	118, 192
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FauI	CCCGC	2 cut(s)	93, 385
Fnu4HI	GCNGC	2 cut(s)	98, 132
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	2 cut(s)	98, 132
GluI	GCNGC	2 cut(s)	98, 132
GsaI	CCCAGC	1 cut(s)	42
HapII	CCGG	5 cut(s)	75, 218, 247, 292, 316
HgaI	GACGC	1 cut(s)	197
HinfI	GANTC	3 cut(s)	149, 171, 225
HpaII	CCGG	5 cut(s)	75, 218, 247, 292, 316
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	336
Hpy188III	TCNNGA	7 cut(s)	178, 218, 229, 292, 306, 308, 359
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	319, 388
HpyCH4IV	ACGT	2 cut(s)	276, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 386
HpyF3I	CTNAG	1 cut(s)	167
HpySE526I	ACGT	2 cut(s)	276, 339
Kpn2I	TCCGGA	2 cut(s)	217, 291
KroI	GCCGGC	1 cut(s)	315
KroNI	GCCGGC	1 cut(s)	317
Kzo9I	GATC	5 cut(s)	233, 261, 361, 400, 408
LmnI	GCTCC	2 cut(s)	27, 220
LpnPI	CCDG	8 cut(s)	52, 84, 88, 134, 231, 260, 305, 329
Lsp1109I	GCAGC	2 cut(s)	109, 143
MaeII	ACGT	2 cut(s)	276, 339
MalI	GATC	5 cut(s)	235, 263, 363, 402, 410
MboI	GATC	5 cut(s)	233, 261, 361, 400, 408
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	2 cut(s)	233, 400
MluCI	AATT	2 cut(s)	52, 330
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	8 cut(s)	73, 76, 120, 171, 185, 250, 259, 308
MroI	TCCGGA	2 cut(s)	217, 291
MroNI	GCCGGC	1 cut(s)	315
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	5 cut(s)	75, 218, 247, 292, 316
MspR9I	CCNGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	2 cut(s)	256, 386
NaeI	GCCGGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	76
NdeII	GATC	5 cut(s)	233, 261, 361, 400, 408
NgoMIV	GCCGGC	1 cut(s)	315
NlaIV	GGNNCC	5 cut(s)	6, 290, 296, 376, 402
PaeR7I	CTCGAG	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	171, 225
PkrI	GCNGC	2 cut(s)	99, 133
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	339
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	5 cut(s)	6, 290, 296, 376, 402
PspPI	GGNCC	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	233, 400
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	2 cut(s)	98, 132
Sau3AI	GATC	5 cut(s)	233, 261, 361, 400, 408
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	5 cut(s)	32, 279, 300, 342, 399
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	306
SmlI	CTYRAG	2 cut(s)	176, 306
SmoI	CTYRAG	2 cut(s)	176, 306
Sse9I	AATT	2 cut(s)	52, 330
SsiI	CCGC	6 cut(s)	100, 237, 250, 259, 319, 378
StyD4I	CCNGG	1 cut(s)	74
TaiI	ACGT	2 cut(s)	279, 342
TaqI	TCGA	4 cut(s)	125, 264, 307, 360
TasI	AATT	2 cut(s)	52, 330
TfiI	GAWTC	2 cut(s)	171, 225
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TseI	GCWGC	2 cut(s)	97, 131
TspDTI	ATGAA	2 cut(s)	338, 407
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.