Rroxscaffold_7G00193290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000483
Physical Location & Seq
Reverse (-)
34754448 .. 34754888
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00193290.1

Sequence Viewer

Length: 441 bp
ATGATAAGGGTTTTAAGCGTCCAACTCCGCAGCGATTCAAGAGATCCGCCTCGGTCCGAAGCGCGTTTGGGCAGATCGAGGACAAGAACGTCTTCTTTTGGTTCCGAACCTCAAATCTCGAGAAAGCCACAGATGAAGGCAATTCGGAACTTTCGGGTTGGTGGATCTCTCGATCTCAACTTTGGACCCGCTTGTTCTATCGATGAAGGTGGATCCATTGATCTAAACTTTGGTTCCACCGATCTTACGAGTGCCGATGGATCCGTCGATTTCAATTTTGGATCATGGGTCGGCCATAGTGTTGACCCATATTCCTCCTCACCTTTCAACACTAATACCGTACTATTTCCTTTGGCACAACAGGAGGACAACCTTTCATGGAACAACGAGGAGGAGATCAGCAGAGATCGAAACTCTTCCTCCGTTCCCCGTGCACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.1

Weight (kDa)

5.82

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 88
AccII CGCG 1 cut(s) 64
AciI CCGC 3 cut(s) 28, 47, 189
AclWI GGATC 7 cut(s) 38, 172, 207, 220, 255, 268, 289
AcoI YGGCCR 1 cut(s) 292
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 3 cut(s) 39, 274, 328
Alw21I GWGCWC 1 cut(s) 436
Alw44I GTGCAC 1 cut(s) 432
AlwI GGATC 7 cut(s) 38, 172, 207, 220, 255, 268, 289
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 1 cut(s) 292
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 30
Asp700I GAANNNNTTC 2 cut(s) 91, 415
AspLEI GCGC 1 cut(s) 64
AspS9I GGNCC 2 cut(s) 54, 185
AsuHPI GGTGA 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 118
AvaII GGWCC 2 cut(s) 54, 185
BaeGI GKGCMC 1 cut(s) 436
BamHI GGATCC 2 cut(s) 212, 260
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 436
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 251
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 54, 185
BmeT110I CYCGRG 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 54, 185
BmiI GGNNCC 5 cut(s) 103, 187, 214, 235, 262
BpiI GAAGAC 1 cut(s) 84
Bsa29I ATCGAT 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 435
BseCI ATCGAT 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 435
BseRI GAGGAG 3 cut(s) 307, 404, 407
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 1 cut(s) 42
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 294
BshVI ATCGAT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 435
BsnI GGCC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 436
BspACI CCGC 3 cut(s) 28, 47, 189
BspANI GGCC 1 cut(s) 294
BspDI ATCGAT 1 cut(s) 201
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 5 cut(s) 103, 187, 214, 235, 262
BspPI GGATC 7 cut(s) 38, 172, 207, 220, 255, 268, 289
BssECI CCNNGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 340, 438
Bst6I CTCTTC 1 cut(s) 421
BstFNI CGCG 1 cut(s) 64
BstHHI GCGC 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 436
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 4 cut(s) 43, 164, 212, 260
BstYI RGATCY 4 cut(s) 43, 164, 212, 260
Bsu15I ATCGAT 1 cut(s) 201
BsuRI GGCC 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 201
CfoI GCGC 1 cut(s) 64
Cfr13I GGNCC 2 cut(s) 54, 185
ClaI ATCGAT 1 cut(s) 201
CpoI CGGWCCG 1 cut(s) 54
CseI GACGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 341
CspI CGGWCCG 1 cut(s) 54
CviAII CATG 2 cut(s) 285, 378
CviJI RGCY 2 cut(s) 127, 294
CviKI_1 RGCY 2 cut(s) 127, 294
CviQI GTAC 1 cut(s) 341
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 421
EciI GGCGGA 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 54, 185
Eco88I CYCGRG 1 cut(s) 118
FaeI CATG 2 cut(s) 288, 381
FaiI YATR 4 cut(s) 286, 297, 310, 379
FalI AAGNNNNNCTT 2 cut(s) 76, 108
FatI CATG 2 cut(s) 284, 377
FauI CCCGC 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 294
HgaI GACGC 1 cut(s) 7
HhaI GCGC 1 cut(s) 64
Hin1II CATG 2 cut(s) 288, 381
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 1 cut(s) 35
HphI GGTGA 1 cut(s) 312
Hpy166II GTNNAC 2 cut(s) 304, 434
Hpy188I TCNGA 3 cut(s) 58, 106, 147
Hpy188III TCNNGA 4 cut(s) 39, 118, 120, 170
Hpy8I GTNNAC 2 cut(s) 304, 434
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 2 cut(s) 130, 200
HpyCH4III ACNGT 2 cut(s) 340, 438
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 2 cut(s) 288, 381
HspAI GCGC 1 cut(s) 62
LpnPI CCDG 1 cut(s) 347
Lsp1109I GCAGC 1 cut(s) 42
MaeII ACGT 1 cut(s) 89
MboII GAAGA 2 cut(s) 84, 408
MflI RGATCY 4 cut(s) 43, 164, 212, 260
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 2 cut(s) 141, 274
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 9 cut(s) 60, 72, 120, 325, 328, 358, 382, 385, 430
MroXI GAANNNNTTC 2 cut(s) 91, 415
MseI TTAA 1 cut(s) 14
MvnI CGCG 1 cut(s) 64
NlaIII CATG 2 cut(s) 288, 381
NlaIV GGNNCC 5 cut(s) 103, 187, 214, 235, 262
PaeR7I CTCGAG 1 cut(s) 118
PdmI GAANNNNTTC 2 cut(s) 91, 415
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 32
PspN4I GGNNCC 5 cut(s) 103, 187, 214, 235, 262
PspPI GGNCC 2 cut(s) 54, 185
PsuI RGATCY 4 cut(s) 43, 164, 212, 260
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
Rsr2I CGGWCCG 1 cut(s) 54
RsrII CGGWCCG 1 cut(s) 54
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 54, 185
SduI GDGCHC 1 cut(s) 436
SetI ASST 5 cut(s) 92, 112, 211, 325, 375
Sfr274I CTCGAG 1 cut(s) 118
SinI GGWCC 2 cut(s) 54, 185
SlaI CTCGAG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 2 cut(s) 141, 274
SsiI CCGC 3 cut(s) 28, 47, 189
TaaI ACNGT 2 cut(s) 340, 438
TaiI ACGT 1 cut(s) 92
TaqI TCGA 6 cut(s) 77, 119, 171, 201, 267, 409
TaqII GACCGA 1 cut(s) 42
TasI AATT 2 cut(s) 141, 274
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 3 cut(s) 149, 219, 366
TspGWI ACGGA 2 cut(s) 253, 412
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 54, 185
XhoI CTCGAG 1 cut(s) 118
XmnI GAANNNNTTC 2 cut(s) 91, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.