Rroxscaffold_3G00236590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000483
Physical Location & Seq
Forward (+)
23956899 .. 23962432
5534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236590.1

Sequence Viewer

Length: 375 bp
ATGGAGGAGATCGTCGCAACGAAGGGAGATGAAGGCGGAGATCGTGGCCGTGTGGGAAGAGATGGGTGCCCAAAGCATTTTCGGCTCTTCGGTGTTGGTGGATCCATCGATCCCAATTTTGGGTTCACTAGTTCTACTAATGATGGCGGGTCCACAGATCTAAATTTTGGGTCCGCCGGTTCTACCGGCGCCGGTGGATCCATCGATCTAAATTTTGGGTCATGGGTCAAGGCCGACCCATATTCCTCCTCACCCTTCAACACTAACACTAGTACTACTTCCTTTTGGCACAAGGGAAGAACAAAATTTCATGGAACAACGAGAAGAACATCACCAGAGATTGAAACTCTTCCTCTCGCTCCCCATGCACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.04

Weight (kDa)

6.4

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 66, 188
AciI CCGC 3 cut(s) 36, 147, 174
AclWI GGATC 5 cut(s) 96, 104, 109, 192, 205
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 3 cut(s) 163, 211, 305
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 2 cut(s) 119, 120
AgsI TTSAA 2 cut(s) 259, 344
AhlI ACTAGT 2 cut(s) 128, 269
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AlwI GGATC 5 cut(s) 96, 104, 109, 192, 205
AoxI GGCC 2 cut(s) 46, 231
ApoI RAATTY 3 cut(s) 163, 211, 305
Asp700I GAANNNNTTC 1 cut(s) 348
AspLEI GCGC 1 cut(s) 191
AspS9I GGNCC 2 cut(s) 150, 171
AsuHPI GGTGA 2 cut(s) 243, 324
AvaII GGWCC 2 cut(s) 150, 171
BaeGI GKGCMC 1 cut(s) 71
BamHI GGATCC 2 cut(s) 101, 197
BanI GGYRCC 2 cut(s) 66, 188
BccI CCATC 4 cut(s) 56, 113, 137, 209
BceAI ACGGC 1 cut(s) 33
BcuI ACTAGT 2 cut(s) 128, 269
BfaI CTAG 2 cut(s) 129, 270
BfoI RGCGCY 1 cut(s) 192
BglII AGATCT 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 274
Bme18I GGWCC 2 cut(s) 150, 171
BmgT120I GGNCC 2 cut(s) 150, 171
BmiI GGNNCC 6 cut(s) 68, 103, 151, 172, 190, 199
Bsa29I ATCGAT 2 cut(s) 108, 204
BsaHI GRCGYC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 120
Bse118I RCCGGY 3 cut(s) 176, 185, 191
BseCI ATCGAT 2 cut(s) 108, 204
BseLI CCNNNNNNNGG 2 cut(s) 119, 120
BseRI GAGGAG 2 cut(s) 20, 238
BseSI GKGCMC 1 cut(s) 71
BshFI GGCC 2 cut(s) 48, 233
BshNI GGYRCC 2 cut(s) 66, 188
BshVI ATCGAT 2 cut(s) 108, 204
BsiSI CCGG 3 cut(s) 177, 186, 192
BslI CCNNNNNNNGG 2 cut(s) 119, 120
BsnI GGCC 2 cut(s) 48, 233
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
BspACI CCGC 3 cut(s) 36, 147, 174
BspANI GGCC 2 cut(s) 48, 233
BspDI ATCGAT 2 cut(s) 108, 204
BspLI GGNNCC 6 cut(s) 68, 103, 151, 172, 190, 199
BspPI GGATC 5 cut(s) 96, 104, 109, 192, 205
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 2 cut(s) 66, 188
BsrFI RCCGGY 3 cut(s) 176, 185, 191
BssAI RCCGGY 3 cut(s) 176, 185, 191
BssMI GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
BssNI GRCGYC 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 372
Bst6I CTCTTC 3 cut(s) 52, 92, 354
BstACI GRCGYC 1 cut(s) 189
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 7 cut(s) 12, 43, 104, 112, 160, 200, 208
BstMBI GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
BstMWI GCNNNNNNNGC 2 cut(s) 82, 365
BstSLI GKGCMC 1 cut(s) 71
BstX2I RGATCY 3 cut(s) 101, 157, 197
BstYI RGATCY 3 cut(s) 101, 157, 197
Bsu15I ATCGAT 2 cut(s) 108, 204
BsuRI GGCC 2 cut(s) 48, 233
BsuTUI ATCGAT 2 cut(s) 108, 204
CfoI GCGC 1 cut(s) 191
Cfr10I RCCGGY 3 cut(s) 176, 185, 191
Cfr13I GGNCC 2 cut(s) 150, 171
ClaI ATCGAT 2 cut(s) 108, 204
Csp6I GTAC 1 cut(s) 273
CviAII CATG 3 cut(s) 222, 311, 365
CviJI RGCY 3 cut(s) 48, 85, 233
CviKI_1 RGCY 3 cut(s) 48, 85, 233
CviQI GTAC 1 cut(s) 273
DinI GGCGCC 1 cut(s) 190
DpnI GATC 7 cut(s) 11, 42, 103, 111, 159, 199, 207
DpnII GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 3 cut(s) 52, 92, 354
EarI CTCTTC 3 cut(s) 52, 92, 354
EciI GGCGGA 2 cut(s) 51, 163
Eco47I GGWCC 2 cut(s) 150, 171
EgeI GGCGCC 1 cut(s) 190
EheI GGCGCC 1 cut(s) 190
FaeI CATG 3 cut(s) 225, 314, 368
FaiI YATR 4 cut(s) 223, 241, 312, 366
FatI CATG 3 cut(s) 221, 310, 364
FauI CCCGC 1 cut(s) 140
FspBI CTAG 2 cut(s) 129, 270
GlaI GCGC 1 cut(s) 190
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 2 cut(s) 48, 233
HapII CCGG 3 cut(s) 177, 186, 192
HhaI GCGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 3 cut(s) 225, 314, 368
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HpaII CCGG 3 cut(s) 177, 186, 192
HphI GGTGA 2 cut(s) 243, 324
Hpy166II GTNNAC 2 cut(s) 126, 153
Hpy8I GTNNAC 2 cut(s) 126, 153
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 16, 26, 265
HpyCH4III ACNGT 1 cut(s) 372
HpyCH4V TGCA 1 cut(s) 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 365
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 3 cut(s) 225, 314, 368
HspAI GCGC 1 cut(s) 189
KasI GGCGCC 1 cut(s) 188
Kzo9I GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 4 cut(s) 190, 199, 205, 348
MaeI CTAG 2 cut(s) 129, 270
MalI GATC 7 cut(s) 11, 42, 103, 111, 159, 199, 207
MboI GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
MboII GAAGA 5 cut(s) 69, 79, 309, 336, 341
MflI RGATCY 3 cut(s) 101, 157, 197
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 4 cut(s) 115, 163, 211, 305
Mly113I GGCGCC 1 cut(s) 189
MnlI CCTC 3 cut(s) 256, 259, 363
MroXI GAANNNNTTC 1 cut(s) 348
MspI CCGG 3 cut(s) 177, 186, 192
MwoI GCNNNNNNNGC 2 cut(s) 82, 365
NarI GGCGCC 1 cut(s) 189
NdeII GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
NlaIII CATG 3 cut(s) 225, 314, 368
NlaIV GGNNCC 6 cut(s) 68, 103, 151, 172, 190, 199
PciSI GCTCTTC 1 cut(s) 92
PdmI GAANNNNTTC 1 cut(s) 348
PluTI GGCGCC 1 cut(s) 192
PspN4I GGNNCC 6 cut(s) 68, 103, 151, 172, 190, 199
PspPI GGNCC 2 cut(s) 150, 171
PsuI RGATCY 3 cut(s) 101, 157, 197
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SapI GCTCTTC 1 cut(s) 92
Sau3AI GATC 7 cut(s) 9, 40, 101, 109, 157, 197, 205
Sau96I GGNCC 2 cut(s) 150, 171
ScaI AGTACT 1 cut(s) 274
SduI GDGCHC 1 cut(s) 71
SfoI GGCGCC 1 cut(s) 190
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 2 cut(s) 150, 171
SpeI ACTAGT 2 cut(s) 128, 269
Sse9I AATT 4 cut(s) 115, 163, 211, 305
SsiI CCGC 3 cut(s) 36, 147, 174
SspDI GGCGCC 1 cut(s) 188
SspMI CTAG 2 cut(s) 129, 270
TaaI ACNGT 1 cut(s) 372
TaqI TCGA 2 cut(s) 108, 204
TasI AATT 4 cut(s) 115, 163, 211, 305
TatI WGTACW 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 45, 299
VpaK11BI GGWCC 2 cut(s) 150, 171
XapI RAATTY 3 cut(s) 163, 211, 305
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 2 cut(s) 129, 270
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.