Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000483

Physical Location & Seq

Genomic Coordinates Forward (+)

29846519 .. 29846974

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00239470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAGGCAATTCGGAACGTTCGAGTTGGTGGATCTCTCGATCTCAACTTTGGATCCACTAGTTCTACCGATGATGGTGGATCCATTGATCTAAACTTTGGTTCCATTGGTTCCACTGGTGCCGATGGATCTATCGATCTAGCTTTTGGGTCATGTGTCGACTATAATGTTGACCCATATTCCTCTTCACCCTTCAACAATAATACCGGTACTACCTCCTTTGGCACAACGGGAGGACAAACTTTCATGGAACAACGAGGAGGAGATCACCGGAGGTCTAAACTCTTCCTCTGTTCCCTCGTGCACGATAAGGACGTCCTTGGTAACCCGAAGACTACTTCCGAGGAAGGTAGCTCATACGGTTACTATTCCGGTGGCTCGGGCAGTTACAACAATGGCTCTCAAGTTTCTCTTGAGCTCGGCCTCAACCCATTCGGAGCCGCCGGCTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

151

Amino Acids

15.55

Weight (kDa)

4.61

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000483)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii	Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa	Rorug04G0280300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	1 cut(s)	441
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	6 cut(s)	40, 48, 61, 75, 88, 136
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	211
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	196
AhlI	ACTAGT	1 cut(s)	59
AluBI	AGCT	4 cut(s)	143, 354, 418, 452
AluI	AGCT	4 cut(s)	143, 354, 418, 452
Alw21I	GWGCWC	2 cut(s)	306, 420
Alw44I	GTGCAC	1 cut(s)	302
AlwI	GGATC	6 cut(s)	40, 48, 61, 75, 88, 136
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	1 cut(s)	421
ApaLI	GTGCAC	1 cut(s)	302
AsiGI	ACCGGT	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	180, 260
AvaI	CYCGRG	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	2 cut(s)	53, 80
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	420
BauI	CACGAG	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	338
Bbv12I	GWGCWC	2 cut(s)	306, 420
BccI	CCATC	2 cut(s)	68, 119
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	2 cut(s)	60, 140
BisI	GCNGC	1 cut(s)	441
BlpI	GCTNAGC	1 cut(s)	448
BlsI	GCNGC	1 cut(s)	442
BmeT110I	CYCGRG	1 cut(s)	379
BmiI	GGNNCC	6 cut(s)	55, 82, 103, 112, 121, 439
BpiI	GAAGAC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	448
BpuEI	CTTGAG	2 cut(s)	387, 434
Bsa29I	ATCGAT	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	319, 342
BsaWI	WCCGGW	3 cut(s)	206, 270, 371
Bse118I	RCCGGY	2 cut(s)	206, 443
Bse1I	ACTGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	319, 342
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	273, 276
BseSI	GKGCMC	1 cut(s)	306
BshFI	GGCC	1 cut(s)	423
BshNI	GGYRCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	306, 420
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	4 cut(s)	207, 271, 372, 444
BsnI	GGCC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	306, 420
Bsp143I	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
Bsp1720I	GCTNAGC	1 cut(s)	448
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	423
BspDI	ATCGAT	1 cut(s)	135
BspLI	GGNNCC	6 cut(s)	55, 82, 103, 112, 121, 439
BspPI	GGATC	6 cut(s)	40, 48, 61, 75, 88, 136
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	206, 443
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	2 cut(s)	206, 443
BssECI	CCNNGG	2 cut(s)	319, 342
BssMI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
BssNI	GRCGYC	1 cut(s)	315
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	319
Bst2BI	CACGAG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	2 cut(s)	190, 290
BstACI	GRCGYC	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	448, 453
BstEII	GGTNACC	1 cut(s)	323
BstKTI	GATC	8 cut(s)	35, 43, 56, 83, 91, 131, 139, 268
BstMBI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstPI	GGTNACC	1 cut(s)	323
BstSLI	GKGCMC	1 cut(s)	306
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	4 cut(s)	32, 53, 80, 128
BstYI	RGATCY	4 cut(s)	32, 53, 80, 128
Bsu15I	ATCGAT	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	445
Cfr10I	RCCGGY	2 cut(s)	206, 443
ClaI	ATCGAT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	210
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	2 cut(s)	153, 247
CviJI	RGCY	9 cut(s)	143, 354, 378, 399, 418, 423, 440, 447, 452
CviKI_1	RGCY	9 cut(s)	143, 354, 378, 399, 418, 423, 440, 447, 452
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	2 cut(s)	448, 453
DpnI	GATC	8 cut(s)	34, 42, 55, 82, 90, 130, 138, 267
DpnII	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
Eam1104I	CTCTTC	2 cut(s)	190, 290
EarI	CTCTTC	2 cut(s)	190, 290
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	379
Eco91I	GGTNACC	1 cut(s)	323
EcoICRI	GAGCTC	1 cut(s)	418
EcoO65I	GGTNACC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	156, 250
FaiI	YATR	5 cut(s)	154, 165, 178, 248, 358
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	2 cut(s)	152, 246
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	441
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	60, 140
GluI	GCNGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	4 cut(s)	207, 271, 372, 444
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	2 cut(s)	156, 250
HincII	GTYRAC	2 cut(s)	160, 172
HindII	GTYRAC	2 cut(s)	160, 172
HpaII	CCGG	4 cut(s)	207, 271, 372, 444
HphI	GGTGA	2 cut(s)	180, 260
Hpy166II	GTNNAC	3 cut(s)	160, 172, 304
Hpy188I	TCNGA	3 cut(s)	15, 343, 437
Hpy188III	TCNNGA	2 cut(s)	38, 413
Hpy8I	GTNNAC	3 cut(s)	160, 172, 304
HpyAV	CCTTC	2 cut(s)	202, 341
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	2 cut(s)	18, 315
HpyCH4V	TGCA	1 cut(s)	304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	2 cut(s)	448, 453
HpySE526I	ACGT	2 cut(s)	18, 315
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	156, 250
KroI	GCCGGC	1 cut(s)	443
KroNI	GCCGGC	1 cut(s)	445
Kzo9I	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	4 cut(s)	102, 220, 284, 385
MaeI	CTAG	2 cut(s)	60, 140
MaeII	ACGT	2 cut(s)	18, 315
MaeIII	GTNAC	3 cut(s)	323, 362, 386
MalI	GATC	8 cut(s)	34, 42, 55, 82, 90, 130, 138, 267
MboI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
MboII	GAAGA	3 cut(s)	177, 277, 343
MflI	RGATCY	4 cut(s)	32, 53, 80, 128
MhlI	GDGCHC	2 cut(s)	306, 420
MluCI	AATT	1 cut(s)	9
MroNI	GCCGGC	1 cut(s)	443
MspI	CCGG	4 cut(s)	207, 271, 372, 444
MwoI	GCNNNNNNNGC	1 cut(s)	449
NaeI	GCCGGC	1 cut(s)	445
NdeII	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
NgoMIV	GCCGGC	1 cut(s)	443
NlaIII	CATG	2 cut(s)	156, 250
NlaIV	GGNNCC	6 cut(s)	55, 82, 103, 112, 121, 439
NmeAIII	GCCGAG	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 312
PdiI	GCCGGC	1 cut(s)	445
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	420
Psp1406I	AACGTT	1 cut(s)	18
PspEI	GGTNACC	1 cut(s)	323
PspN4I	GGNNCC	6 cut(s)	55, 82, 103, 112, 121, 439
PsuI	RGATCY	4 cut(s)	32, 53, 80, 128
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	420
SalI	GTCGAC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	8 cut(s)	32, 40, 53, 80, 88, 128, 136, 265
SduI	GDGCHC	2 cut(s)	306, 420
SetI	ASST	9 cut(s)	21, 145, 218, 278, 318, 352, 356, 420, 454
SmlI	CTYRAG	2 cut(s)	402, 413
SmoI	CTYRAG	2 cut(s)	402, 413
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	2 cut(s)	60, 140
SstI	GAGCTC	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	2 cut(s)	21, 318
TaqI	TCGA	4 cut(s)	22, 39, 135, 159
TasI	AATT	1 cut(s)	9
TauI	GCSGC	1 cut(s)	443
TscAI	CASTG	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	17, 235
TspRI	CASTG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	60, 140
ZraI	GACGTC	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.