Rroxscaffold_2G00128260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000483
Physical Location & Seq
Reverse (-)
63958643 .. 63958975
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128260.1

Sequence Viewer

Length: 333 bp
ATGAAGGCATTTCGGAACGTCCGGGTTGGCGGATCTCTCGATCTCAACTTTGGACCCGCAAGTTCTACGGATGAAGGTGGATCCATCGATTTGAACTTTGGTCCCACTGTTCCTACAGGTGCAGATGGATCCATCTATCTCGCTTTCGGGTCAAACGTCGACCATCCTGTCGACCCGAATACCACTTCACCCTTCAACAATAACAACGGTACTACCTCCTTCGGCACAACGGAGGTCAACCATCCATGGAACAACGAGGAGGAGATCAGCAGGAGATCGAAACTCTTCCTCCGTTCCCCGTGCATAGGGAGGACATCTTTGGTAACCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.8

Weight (kDa)

5.54

Isoelectric Point (pI)

42.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000483)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002132.1_g000009 Rmu_sc0002786.1_g000030
rosa_roxburghii Rroxscaffold_159G00432910 Rroxscaffold_159G00433130 Rroxscaffold_166G00440820 Rroxscaffold_173G00435050 Rroxscaffold_174G00435100 Rroxscaffold_180G00433390 Rroxscaffold_180G00433400 Rroxscaffold_180G00433440 Rroxscaffold_180G00433490 Rroxscaffold_1G00000420 Rroxscaffold_1G00000930 Rroxscaffold_1G00002350 Rroxscaffold_1G00003270 Rroxscaffold_1G00003640 Rroxscaffold_1G00004210 Rroxscaffold_1G00022320 Rroxscaffold_1G00036090 Rroxscaffold_1G00042540 Rroxscaffold_2G00080860 Rroxscaffold_2G00084440 Rroxscaffold_2G00085920 Rroxscaffold_2G00087210 Rroxscaffold_2G00087260 Rroxscaffold_2G00089240 Rroxscaffold_2G00096210 Rroxscaffold_2G00098680 Rroxscaffold_2G00099730 Rroxscaffold_2G00102340 Rroxscaffold_2G00102390 Rroxscaffold_2G00107430 Rroxscaffold_2G00115560 Rroxscaffold_2G00128260 Rroxscaffold_3G00221780 Rroxscaffold_3G00224580 Rroxscaffold_3G00225490 Rroxscaffold_3G00234530 Rroxscaffold_3G00235740 Rroxscaffold_3G00236590 Rroxscaffold_3G00239210 Rroxscaffold_3G00239230 Rroxscaffold_3G00239360 Rroxscaffold_3G00239370 Rroxscaffold_3G00239470 Rroxscaffold_3G00239810 Rroxscaffold_3G00251240 Rroxscaffold_4G00289430 Rroxscaffold_4G00289730 Rroxscaffold_4G00312680 Rroxscaffold_4G00312710 Rroxscaffold_4G00315640 Rroxscaffold_4G00316240 Rroxscaffold_4G00316300 Rroxscaffold_4G00317170 Rroxscaffold_4G00317290 Rroxscaffold_4G00321790 Rroxscaffold_4G00322370 Rroxscaffold_4G00330370 Rroxscaffold_4G00331530 Rroxscaffold_4G00332570 Rroxscaffold_5G00338020 Rroxscaffold_5G00339400 Rroxscaffold_5G00344280 Rroxscaffold_5G00345300 Rroxscaffold_5G00346730 Rroxscaffold_5G00359170 Rroxscaffold_5G00370850 Rroxscaffold_5G00371460 Rroxscaffold_5G00380840 Rroxscaffold_6G00389750 Rroxscaffold_6G00389760 Rroxscaffold_6G00390470 Rroxscaffold_6G00390510 Rroxscaffold_6G00390560 Rroxscaffold_6G00390590 Rroxscaffold_6G00391550 Rroxscaffold_6G00391700 Rroxscaffold_6G00398420 Rroxscaffold_7G00183290 Rroxscaffold_7G00184060 Rroxscaffold_7G00191180 Rroxscaffold_7G00193290 Rroxscaffold_7G00195040 Rroxscaffold_7G00196890 Rroxscaffold_7G00199380 Rroxscaffold_7G00199440 Rroxscaffold_7G00201010 Rroxscaffold_7G00202460
rosa_rugosa Rorug04G0280300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AccI GTMKAC 2 cut(s) 159, 171
AciI CCGC 2 cut(s) 30, 57
AclWI GGATC 5 cut(s) 40, 75, 88, 123, 136
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 94, 196
AlwI GGATC 5 cut(s) 40, 75, 88, 123, 136
Asp700I GAANNNNTTC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 53, 101
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 53, 101
BamHI GGATCC 2 cut(s) 80, 128
BccI CCATC 5 cut(s) 92, 119, 140, 171, 249
BcnI CCSGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 114
Bme1390I CCNGG 1 cut(s) 23
Bme18I GGWCC 2 cut(s) 53, 101
BmgT120I GGNCC 2 cut(s) 53, 101
BmiI GGNNCC 4 cut(s) 55, 82, 103, 130
BmrFI CCNGG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 3 cut(s) 76, 163, 241
BseLI CCNNNNNNNGG 1 cut(s) 305
BseRI GAGGAG 2 cut(s) 272, 275
BsgI GTGCAG 1 cut(s) 141
BshVI ATCGAT 1 cut(s) 87
BsiSI CCGG 1 cut(s) 22
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 87
Bsp143I GATC 6 cut(s) 32, 40, 80, 128, 264, 275
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 2 cut(s) 30, 57
BspDI ATCGAT 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 55, 82, 103, 130
BspPI GGATC 5 cut(s) 40, 75, 88, 123, 136
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 6 cut(s) 32, 40, 80, 128, 264, 275
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 109, 209
Bst6I CTCTTC 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 245
BstEII GGTNACC 1 cut(s) 322
BstF5I GGATG 3 cut(s) 76, 163, 241
BstKTI GATC 6 cut(s) 35, 43, 83, 131, 267, 278
BstMBI GATC 6 cut(s) 32, 40, 80, 128, 264, 275
BstPI GGTNACC 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 114
BstX2I RGATCY 3 cut(s) 32, 80, 128
BstYI RGATCY 3 cut(s) 32, 80, 128
Bsu15I ATCGAT 1 cut(s) 87
BsuTUI ATCGAT 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 76, 163, 241
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 53, 101
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 246
CviQI GTAC 1 cut(s) 210
DpnI GATC 6 cut(s) 34, 42, 82, 130, 266, 277
DpnII GATC 6 cut(s) 32, 40, 80, 128, 264, 275
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
EciI GGCGGA 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 245
Eco47I GGWCC 2 cut(s) 53, 101
Eco91I GGTNACC 1 cut(s) 322
EcoO65I GGTNACC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 1 cut(s) 249
FaiI YATR 2 cut(s) 247, 305
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 245
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 2 cut(s) 159, 171
FokI GGATG 3 cut(s) 83, 150, 228
HapII CCGG 1 cut(s) 22
Hin1II CATG 1 cut(s) 249
HincII GTYRAC 3 cut(s) 160, 172, 238
HindII GTYRAC 3 cut(s) 160, 172, 238
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 160, 172, 238
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 3 cut(s) 160, 172, 238
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 68, 202, 229
HpyCH4III ACNGT 2 cut(s) 109, 209
HpyCH4IV ACGT 2 cut(s) 18, 156
HpyCH4V TGCA 2 cut(s) 122, 303
HpySE526I ACGT 2 cut(s) 18, 156
Hsp92II CATG 1 cut(s) 249
Kzo9I GATC 6 cut(s) 32, 40, 80, 128, 264, 275
LpnPI CCDG 4 cut(s) 35, 102, 180, 256
MaeII ACGT 2 cut(s) 18, 156
MaeIII GTNAC 1 cut(s) 322
MalI GATC 6 cut(s) 34, 42, 82, 130, 266, 277
MboI GATC 6 cut(s) 32, 40, 80, 128, 264, 275
MboII GAAGA 1 cut(s) 277
MflI RGATCY 3 cut(s) 32, 80, 128
MnlI CCTC 6 cut(s) 226, 226, 250, 253, 299, 303
MroXI GAANNNNTTC 1 cut(s) 284
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 23
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 245
NdeII GATC 6 cut(s) 32, 40, 80, 128, 264, 275
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 4 cut(s) 55, 82, 103, 130
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 284
PspEI GGTNACC 1 cut(s) 322
PspN4I GGNNCC 4 cut(s) 55, 82, 103, 130
PspPI GGNCC 2 cut(s) 53, 101
PsuI RGATCY 3 cut(s) 32, 80, 128
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SalI GTCGAC 2 cut(s) 158, 170
Sau3AI GATC 6 cut(s) 32, 40, 80, 128, 264, 275
Sau96I GGNCC 2 cut(s) 53, 101
ScrFI CCNGG 1 cut(s) 23
SetI ASST 6 cut(s) 21, 79, 121, 159, 218, 237
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 2 cut(s) 53, 101
SsiI CCGC 2 cut(s) 30, 57
StyD4I CCNGG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 109, 209
TaiI ACGT 2 cut(s) 21, 159
TaqI TCGA 5 cut(s) 39, 87, 159, 171, 278
TscAI CASTG 1 cut(s) 112
TspDTI ATGAA 2 cut(s) 17, 87
TspGWI ACGGA 3 cut(s) 83, 245, 281
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 53, 101
XmiI GTMKAC 2 cut(s) 159, 171
XmnI GAANNNNTTC 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.