FvH4_4g17782

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000270
Physical Location & Seq
Forward (+)
21770231 .. 21775652
5422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17782.t1

Sequence Viewer

Length: 972 bp
ATGGTGGACTTGAAAATTATCAATACTTCAGAATATGAAGTTAGTTTCAACAATTCTGGTTGGAAAGGAAGCAATAACATTGGAGGACGTGGATGCCGTGTTGGTTGTCCAAGCGGCAAAGCAGTCGTCCTTGATCATAATCAGCCGGCCGGCCGTGTTCTTCCGCTGACGGCGGGAGAAGAGCTTTGGACCCGCAGAGATAACTCGGAATTTCTGGGCAACAACGAGAAATCAGATGGAGGAGAGCACGTGCGATTCCAGACCTCGGGAGGAGAGCAGGAGCAGGTCCGATTCAGGAACTCGGAATTCCCGATCTCAGAATTTCTGGGAAATTCTTCGATTTCAAGTCCAGTTGGTTCTCCAATTTCCAGTCAGCTTTCTGATCCAGTTTCAAGGCCAGAAGAGATATTCCGAGCTAAGATTGATGATCTCCCGGAGGTTTTATTGGTTGAGATTCTGTGTCGGCTTTCCTGCAGTAAACTCATATTCCAATGCAAGCTTGTGTCCAAGACTTGGTACAATCTCATATCTGCTCCTTACTTTGTTCGCCGCTATCTATGCGTTCAACGTCAGATGCAAAAGCCTGTTCTGAAAACCCTAGTTTTTTTCGAGATAACCAAACCAATATCTCTCATCACAACGTCGGATCATCCGGTCTTCAAAGCAGCTGCAAGTAATTTCACTCTTGGTTTCCTCCCATGTCATAGCCAAGCAAAACATATAGAAGAACTACTAAAAGGATACCCCCTAATGAGGCATCTGATCGAAGAACCAGGTTCCGTTGTACCACCGATTGTGGTAGGCTCTTATAATGACTTGGTTTTATGCTGCGCAACCAAGTATTATCTCTGCAATCCATATCATTACTACCTCTGCAATCCATACACCAAACAATGGGTTCCTCTTCCTCCCACACCTCAAGTCTCCCGCGACGCTCCTGTGGCCTTTGTATGTGATCCATATTATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

324

Amino Acids

36.32

Weight (kDa)

7.5

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 141 - 182 3.5e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 810
Acc16I TGCGCA 1 cut(s) 832
Acc36I ACCTGC 1 cut(s) 274
AccB7I CCANNNNNTGG 2 cut(s) 513, 894
AccII CGCG 1 cut(s) 930
AciI CCGC 6 cut(s) 114, 164, 173, 193, 550, 928
AclWI GGATC 3 cut(s) 377, 654, 950
AcoI YGGCCR 2 cut(s) 147, 151
AcsI RAATTY 4 cut(s) 209, 305, 320, 331
AcuI CTGAAG 1 cut(s) 12
AcvI CACGTG 1 cut(s) 250
AfaI GTAC 2 cut(s) 518, 786
AfiI CCNNNNNNNGG 4 cut(s) 265, 513, 753, 894
AgsI TTSAA 6 cut(s) 13, 49, 345, 393, 566, 661
AjiI CACGTC 1 cut(s) 89
AjnI CCWGG 1 cut(s) 772
AluBI AGCT 5 cut(s) 184, 376, 416, 499, 668
AluI AGCT 5 cut(s) 184, 376, 416, 499, 668
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 928
AlwI GGATC 3 cut(s) 377, 654, 950
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 4 cut(s) 147, 151, 395, 942
ApeKI GCWGC 3 cut(s) 665, 668, 828
ApoI RAATTY 4 cut(s) 209, 305, 320, 331
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 833
AspS9I GGNCC 2 cut(s) 189, 286
AsuC2I CCSGG 1 cut(s) 434
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 2 cut(s) 189, 286
BbrPI CACGTG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 3 cut(s) 655, 677, 815
BccI CCATC 1 cut(s) 230
BceAI ACGGC 3 cut(s) 81, 138, 186
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 774
BciVI GTATCC 1 cut(s) 734
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 928
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 472
BfuAI ACCTGC 1 cut(s) 274
BfuI GTATCC 1 cut(s) 734
BisI GCNGC 5 cut(s) 115, 550, 666, 669, 829
BlsI GCNGC 5 cut(s) 116, 551, 667, 670, 830
Bme1390I CCNGG 2 cut(s) 434, 774
Bme18I GGWCC 2 cut(s) 189, 286
BmeT110I CYCGRG 1 cut(s) 265
BmgBI CACGTC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 189, 286
BmiI GGNNCC 3 cut(s) 191, 778, 900
BmrFI CCNGG 2 cut(s) 434, 774
BmsI GCATC 3 cut(s) 83, 564, 766
BpiI GAAGAC 1 cut(s) 649
BpuEI CTTGAG 1 cut(s) 903
BpuMI CCSGG 1 cut(s) 434
BsaAI YACGTR 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 652
BsaXI ACNNNNNCTCC 2 cut(s) 234, 264
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 513, 753, 894
Bse118I RCCGGY 2 cut(s) 145, 149
Bse1I ACTGG 3 cut(s) 350, 369, 386
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 98, 649
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 4 cut(s) 265, 513, 753, 894
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 3 cut(s) 350, 369, 386
BseRI GAGGAG 2 cut(s) 255, 285
BseX3I CGGCCG 2 cut(s) 147, 151
BseXI GCAGC 3 cut(s) 655, 677, 815
Bsh1236I CGCG 1 cut(s) 930
Bsh1285I CGRYCG 2 cut(s) 150, 154
BshFI GGCC 4 cut(s) 149, 153, 397, 944
BsiEI CGRYCG 2 cut(s) 150, 154
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 4 cut(s) 146, 150, 434, 653
BslI CCNNNNNNNGG 4 cut(s) 265, 513, 753, 894
BsmAI GTCTC 1 cut(s) 928
BsnI GGCC 4 cut(s) 149, 153, 397, 944
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
BspACI CCGC 6 cut(s) 114, 164, 173, 193, 550, 928
BspANI GGCC 4 cut(s) 149, 153, 397, 944
BspCNI CTCAG 1 cut(s) 329
BspFNI CGCG 1 cut(s) 930
BspLI GGNNCC 3 cut(s) 191, 778, 900
BspMAI CTGCAG 1 cut(s) 476
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 3 cut(s) 377, 654, 950
BspQI GCTCTTC 1 cut(s) 174
BsrFI RCCGGY 2 cut(s) 145, 149
BsrI ACTGG 3 cut(s) 350, 369, 386
BssAI RCCGGY 2 cut(s) 145, 149
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
Bst2UI CCWGG 1 cut(s) 774
Bst6I CTCTTC 3 cut(s) 174, 396, 909
BstBAI YACGTR 1 cut(s) 250
BstC8I GCNNGC 3 cut(s) 147, 151, 497
BstDEI CTNAG 2 cut(s) 316, 417
BstF5I GGATG 2 cut(s) 98, 649
BstFNI CGCG 1 cut(s) 930
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 7 cut(s) 136, 315, 385, 430, 649, 765, 958
BstMAI GTCTC 1 cut(s) 928
BstMBI GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
BstMCI CGRYCG 2 cut(s) 150, 154
BstMWI GCNNNNNNNGC 2 cut(s) 558, 941
BstNI CCWGG 1 cut(s) 774
BstSCI CCNGG 2 cut(s) 432, 772
BstSFI CTRYAG 1 cut(s) 472
BstUI CGCG 1 cut(s) 930
BstV1I GCAGC 3 cut(s) 655, 677, 815
BstV2I GAAGAC 1 cut(s) 649
BstZI CGGCCG 2 cut(s) 147, 151
BsuI GTATCC 1 cut(s) 734
BsuRI GGCC 4 cut(s) 149, 153, 397, 944
BtrI CACGTC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 98, 649
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 3 cut(s) 147, 151, 497
CfoI GCGC 1 cut(s) 833
Cfr10I RCCGGY 2 cut(s) 145, 149
Cfr13I GGNCC 2 cut(s) 189, 286
CseI GACGC 1 cut(s) 941
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 2 cut(s) 517, 785
CviAII CATG 1 cut(s) 699
CviQI GTAC 2 cut(s) 517, 785
DdeI CTNAG 2 cut(s) 316, 417
DpnI GATC 7 cut(s) 135, 314, 384, 429, 648, 764, 957
DpnII GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
EaeI YGGCCR 2 cut(s) 147, 151
EagI CGGCCG 2 cut(s) 147, 151
Eam1104I CTCTTC 3 cut(s) 174, 396, 909
EarI CTCTTC 3 cut(s) 174, 396, 909
EclXI CGGCCG 2 cut(s) 147, 151
Eco47I GGWCC 2 cut(s) 189, 286
Eco52I CGGCCG 2 cut(s) 147, 151
Eco57I CTGAAG 1 cut(s) 12
Eco72I CACGTG 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 265
EcoRI GAATTC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 772
FaeI CATG 1 cut(s) 702
FatI CATG 1 cut(s) 698
FauI CCCGC 3 cut(s) 166, 200, 935
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 5 cut(s) 115, 550, 666, 669, 829
FokI GGATG 2 cut(s) 105, 636
FseI GGCCGGCC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 115, 550, 666, 669, 829
FspBI CTAG 1 cut(s) 599
FspI TGCGCA 1 cut(s) 832
GlaI GCGC 1 cut(s) 832
GluI GCNGC 5 cut(s) 115, 550, 666, 669, 829
HaeIII GGCC 4 cut(s) 149, 153, 397, 944
HapII CCGG 4 cut(s) 146, 150, 434, 653
HgaI GACGC 1 cut(s) 941
HhaI GCGC 1 cut(s) 833
Hin1II CATG 1 cut(s) 702
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 3 cut(s) 255, 291, 454
HpaII CCGG 4 cut(s) 146, 150, 434, 653
Hpy166II GTNNAC 2 cut(s) 7, 479
Hpy188III TCNNGA 5 cut(s) 259, 267, 295, 310, 610
Hpy8I GTNNAC 2 cut(s) 7, 479
Hpy99I CGWCG 2 cut(s) 646, 935
HpyCH4IV ACGT 4 cut(s) 88, 249, 568, 641
HpyCH4V TGCA 6 cut(s) 474, 495, 577, 671, 852, 876
HpyF10VI GCNNNNNNNGC 2 cut(s) 558, 941
HpyF3I CTNAG 2 cut(s) 316, 417
HpySE526I ACGT 4 cut(s) 88, 249, 568, 641
Hsp92II CATG 1 cut(s) 702
HspAI GCGC 1 cut(s) 831
KroI GCCGGC 2 cut(s) 145, 149
KroNI GCCGGC 2 cut(s) 147, 151
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
LguI GCTCTTC 1 cut(s) 174
LmnI GCTCC 3 cut(s) 280, 538, 940
Lsp1109I GCAGC 3 cut(s) 655, 677, 815
LweI GCATC 3 cut(s) 83, 564, 766
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 1 cut(s) 599
MaeII ACGT 4 cut(s) 88, 249, 568, 641
MalI GATC 7 cut(s) 135, 314, 384, 429, 648, 764, 957
MboI GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
MboII GAAGA 8 cut(s) 152, 191, 327, 413, 649, 737, 779, 896
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 8 cut(s) 15, 52, 209, 305, 320, 331, 363, 676
MmeI TCCRAC 2 cut(s) 41, 624
MroNI GCCGGC 2 cut(s) 145, 149
MroXI GAANNNNTTC 1 cut(s) 334
MspA1I CMGCKG 2 cut(s) 166, 668
MspI CCGG 4 cut(s) 146, 150, 434, 653
MspR9I CCNGG 2 cut(s) 434, 774
MvaI CCWGG 1 cut(s) 774
MvnI CGCG 1 cut(s) 930
MwoI GCNNNNNNNGC 2 cut(s) 558, 941
NaeI GCCGGC 2 cut(s) 147, 151
NciI CCSGG 1 cut(s) 434
NdeII GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
NgoMIV GCCGGC 2 cut(s) 145, 149
NlaIII CATG 1 cut(s) 702
NlaIV GGNNCC 3 cut(s) 191, 778, 900
NsbI TGCGCA 1 cut(s) 832
PciSI GCTCTTC 1 cut(s) 174
PcsI WCGNNNNNNNCGW 2 cut(s) 94, 308
PdiI GCCGGC 2 cut(s) 147, 151
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 255, 291, 454
PflMI CCANNNNNTGG 2 cut(s) 513, 894
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 5 cut(s) 116, 551, 667, 670, 830
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 250
PsiI TTATAA 1 cut(s) 810
Psp6I CCWGG 1 cut(s) 772
PspCI CACGTG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 3 cut(s) 191, 778, 900
PspPI GGNCC 2 cut(s) 189, 286
PstI CTGCAG 1 cut(s) 476
PvuII CAGCTG 1 cut(s) 668
RigI GGCCGGCC 1 cut(s) 153
RsaI GTAC 2 cut(s) 518, 786
RsaNI GTAC 2 cut(s) 517, 785
SapI GCTCTTC 1 cut(s) 174
SatI GCNGC 5 cut(s) 115, 550, 666, 669, 829
Sau3AI GATC 7 cut(s) 133, 312, 382, 427, 646, 762, 955
Sau96I GGNCC 2 cut(s) 189, 286
ScrFI CCNGG 2 cut(s) 434, 774
SduI GDGCHC 1 cut(s) 249
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 3 cut(s) 83, 564, 766
SfcI CTRYAG 1 cut(s) 472
SinI GGWCC 2 cut(s) 189, 286
SmlI CTYRAG 1 cut(s) 918
SmoI CTYRAG 1 cut(s) 918
Sse9I AATT 8 cut(s) 15, 52, 209, 305, 320, 331, 363, 676
SsiI CCGC 6 cut(s) 114, 164, 173, 193, 550, 928
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 2 cut(s) 432, 772
TaiI ACGT 4 cut(s) 91, 252, 571, 644
TaqI TCGA 3 cut(s) 338, 609, 765
TasI AATT 8 cut(s) 15, 52, 209, 305, 320, 331, 363, 676
TauI GCSGC 2 cut(s) 117, 552
TfiI GAWTC 3 cut(s) 255, 291, 454
TseI GCWGC 3 cut(s) 665, 668, 828
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 769
Van91I CCANNNNNTGG 2 cut(s) 513, 894
VpaK11BI GGWCC 2 cut(s) 189, 286
XapI RAATTY 4 cut(s) 209, 305, 320, 331
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.