Rmu_sc0000610.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000610.1
OG0000270
Physical Location & Seq
Reverse (-)
20843 .. 22012
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000610.1_g000009.1.cds

Sequence Viewer

Length: 1170 bp
atggtcccttataaggataacaaaattgtaccccttacctcgtcttccattcttccaagctctttgtcattgagtttcctcccttgttttgaatctcctaaccaagataatgagccaattgtggaagcaatttttgatgacttggccttgtgctgcgcaaccaggaactatcaatactattactacatctgcaatccactcactaagcaatgggttgctcttccccctgtccctcaagtcatcgagttgaaagtaccagtggggttcatttgtgaaccctactgtgatcatggaagagaagagcaaaatagtgccagaagtagtagtcgctctatcatgaagcttaacaccggctataggtgcagggttgtgcgaatactcccaaatagaatatgtcatccagaactgggtttctatgtgcagatcttctcttctgagacaggtgaatggagggagtatcggttgcctaatctaataaaaaagttcggttggttcattgcttggaggcctggcgttgcttgcaaaggcaaattatattggtacaatgacggtggctttacttttgagttggatccgttcaatattagtactagcggttttacttctcgtgctattattgacaaatgtcgtttcactaaaacgccgagaaagtgcttccatctaggtgtgtgccaagggcgtttgcggatgtacccattttccataatggaaactattagtatttgggaactgaaagaaaattcaggcaacttggaatggtgtttgatatttgacagagttcctatgttggatatggtttcccaagatcctaagatcactaaagaaaaatcgggcaaattggacgtgctaggtttccacccaagcaatgaggatgtcgtgtatttgaaatttcctgaacatataatcatgtgcaatcttcgcaaaaagacgttagagaagagtccagttgatccccatacaaacattcaatttgatttcagttgcaatgttgatgaaaagaggttttcatttggtcgccctacaaatattcttccatatgtgcttccatggtggcctacaccagttcctagaatcaataaaccaaagaagcgccagatcaaggtcttgaaacagtttgatatattcctaccttcagagagcttcttgattgtgtcgtccaaaacttcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

389

Amino Acids

45.15

Weight (kDa)

8.91

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 157
AciI CCGC 2 cut(s) 594, 685
AclWI GGATC 4 cut(s) 566, 579, 800, 944
AcsI RAATTY 2 cut(s) 739, 887
AcuI CTGAAG 1 cut(s) 1116
AfaI GTAC 5 cut(s) 30, 255, 542, 589, 692
AfiI CCNNNNNNNGG 4 cut(s) 13, 357, 407, 1099
AgsI TTSAA 6 cut(s) 92, 250, 580, 886, 968, 1108
AjiI CACGTC 1 cut(s) 844
AjnI CCWGG 2 cut(s) 161, 508
AluBI AGCT 3 cut(s) 60, 343, 1140
AluI AGCT 3 cut(s) 60, 343, 1140
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 4 cut(s) 566, 579, 800, 944
AoxI GGCC 3 cut(s) 144, 506, 1052
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 739, 887
AspLEI GCGC 2 cut(s) 158, 1092
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 4
BamHI GGATCC 1 cut(s) 571
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 666
BciT130I CCWGG 2 cut(s) 163, 510
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 4 cut(s) 591, 662, 848, 1068
BfmI CTRYAG 1 cut(s) 355
BfoI RGCGCY 1 cut(s) 1093
BglII AGATCT 1 cut(s) 423
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 2 cut(s) 163, 510
Bme18I GGWCC 1 cut(s) 4
BmgBI CACGTC 1 cut(s) 844
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 6, 573
BmrFI CCNGG 2 cut(s) 163, 510
BmrI ACTGGG 1 cut(s) 416
BmuI ACTGGG 1 cut(s) 416
BoxI GACNNNNGTC 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 36
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 673, 1046
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 357, 407, 1099
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 4 cut(s) 257, 411, 944, 1061
Bse3DI GCAATG 4 cut(s) 215, 495, 871, 991
BseBI CCWGG 2 cut(s) 163, 510
BseDI CCNNGG 2 cut(s) 673, 1046
BseGI GGATG 3 cut(s) 397, 693, 877
BseLI CCNNNNNNNGG 4 cut(s) 13, 357, 407, 1099
BseMI GCAATG 4 cut(s) 215, 495, 871, 991
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 4 cut(s) 257, 411, 944, 1061
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 2 cut(s) 382, 440
BshFI GGCC 3 cut(s) 146, 508, 1054
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 4 cut(s) 13, 357, 407, 1099
BsmAI GTCTC 1 cut(s) 431
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 3 cut(s) 146, 508, 1054
Bsp143I GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
Bsp19I CCATGG 1 cut(s) 1046
BspACI CCGC 2 cut(s) 594, 685
BspANI GGCC 3 cut(s) 146, 508, 1054
BspCNI CTCAG 1 cut(s) 427
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 6, 573
BspPI GGATC 4 cut(s) 566, 579, 800, 944
BspQI GCTCTTC 2 cut(s) 225, 294
BsrDI GCAATG 4 cut(s) 215, 495, 871, 991
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 4 cut(s) 257, 411, 944, 1061
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 673, 1046
BssMI GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 2 cut(s) 673, 1046
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 163, 510
Bst4CI ACNGT 3 cut(s) 284, 551, 1113
Bst6I CTCTTC 5 cut(s) 225, 289, 294, 436, 932
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 204, 435, 810
BstDSI CCRYGG 1 cut(s) 1046
BstF5I GGATG 3 cut(s) 397, 693, 877
BstH2I RGCGCY 1 cut(s) 1093
BstHHI GCGC 2 cut(s) 158, 1092
BstKTI GATC 7 cut(s) 289, 426, 574, 808, 816, 952, 1098
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
BstMWI GCNNNNNNNGC 3 cut(s) 360, 519, 918
BstNI CCWGG 2 cut(s) 163, 510
BstPAI GACNNNNGTC 1 cut(s) 624
BstSCI CCNGG 2 cut(s) 161, 508
BstSFI CTRYAG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 3 cut(s) 423, 571, 805
BstYI RGATCY 3 cut(s) 423, 571, 805
BsuRI GGCC 3 cut(s) 146, 508, 1054
BtgI CCRYGG 1 cut(s) 1046
BtrI CACGTC 1 cut(s) 844
BtsCI GGATG 3 cut(s) 397, 693, 877
BtsIMutI CAGTG 1 cut(s) 264
Cac8I GCNNGC 1 cut(s) 520
CciI TCATGA 1 cut(s) 336
CfoI GCGC 2 cut(s) 158, 1092
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 5 cut(s) 29, 254, 541, 588, 691
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 4 cut(s) 290, 337, 907, 1047
CviJI RGCY 9 cut(s) 60, 115, 146, 343, 354, 508, 555, 1054, 1140
CviKI_1 RGCY 9 cut(s) 60, 115, 146, 343, 354, 508, 555, 1054, 1140
CviQI GTAC 5 cut(s) 29, 254, 541, 588, 691
DdeI CTNAG 3 cut(s) 204, 435, 810
DpnI GATC 7 cut(s) 288, 425, 573, 807, 815, 951, 1097
DpnII GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
Eam1104I CTCTTC 5 cut(s) 225, 289, 294, 436, 932
EarI CTCTTC 5 cut(s) 225, 289, 294, 436, 932
Eco130I CCWWGG 2 cut(s) 673, 1046
Eco147I AGGCCT 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 1116
EcoRII CCWGG 2 cut(s) 161, 508
EcoT14I CCWWGG 2 cut(s) 673, 1046
ErhI CCWWGG 2 cut(s) 673, 1046
FaeI CATG 4 cut(s) 293, 340, 910, 1050
FaqI GGGAC 1 cut(s) 215
FatI CATG 4 cut(s) 289, 336, 906, 1046
FauNDI CATATG 1 cut(s) 1036
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 3 cut(s) 384, 700, 884
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 4 cut(s) 591, 662, 848, 1068
FspI TGCGCA 1 cut(s) 157
GlaI GCGC 2 cut(s) 157, 1091
GluI GCNGC 1 cut(s) 154
HaeII RGCGCY 1 cut(s) 1093
HaeIII GGCC 3 cut(s) 146, 508, 1054
HapII CCGG 1 cut(s) 351
HhaI GCGC 2 cut(s) 158, 1092
Hin1II CATG 4 cut(s) 293, 340, 910, 1050
Hin6I GCGC 2 cut(s) 156, 1090
HinP1I GCGC 2 cut(s) 156, 1090
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 3 cut(s) 92, 940, 1071
HpaII CCGG 1 cut(s) 351
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 436, 1135
Hpy188III TCNNGA 6 cut(s) 337, 401, 893, 1105, 1144, 1167
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 1 cut(s) 1140
HpyCH4III ACNGT 3 cut(s) 284, 551, 1113
HpyCH4IV ACGT 2 cut(s) 843, 929
HpyCH4V TGCA 6 cut(s) 192, 363, 421, 522, 912, 984
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 519, 918
HpyF3I CTNAG 3 cut(s) 204, 435, 810
HpySE526I ACGT 2 cut(s) 843, 929
Hsp92II CATG 4 cut(s) 293, 340, 910, 1050
HspAI GCGC 2 cut(s) 156, 1090
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
LguI GCTCTTC 2 cut(s) 225, 294
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 4 cut(s) 591, 662, 848, 1068
MaeII ACGT 2 cut(s) 843, 929
MalI GATC 7 cut(s) 288, 425, 573, 807, 815, 951, 1097
MboI GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
MfeI CAATTG 1 cut(s) 117
MflI RGATCY 3 cut(s) 423, 571, 805
MluCI AATT 8 cut(s) 24, 117, 129, 530, 739, 836, 887, 968
MlyI GAGTC 1 cut(s) 949
MmeI TCCRAC 2 cut(s) 549, 768
MnlI CCTC 7 cut(s) 49, 89, 243, 444, 498, 862, 993
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 663
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 163, 510
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 2 cut(s) 163, 510
MwoI GCNNNNNNNGC 3 cut(s) 360, 519, 918
NcoI CCATGG 1 cut(s) 1046
NdeI CATATG 1 cut(s) 1036
NdeII GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
NlaIII CATG 4 cut(s) 293, 340, 910, 1050
NlaIV GGNNCC 2 cut(s) 6, 573
NmeAIII GCCGAG 1 cut(s) 669
NsbI TGCGCA 1 cut(s) 157
PagI TCATGA 1 cut(s) 336
PceI AGGCCT 1 cut(s) 508
PciSI GCTCTTC 2 cut(s) 225, 294
PfeI GAWTC 2 cut(s) 92, 1071
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 1 cut(s) 948
PpsI GAGTC 1 cut(s) 948
PshAI GACNNNNGTC 1 cut(s) 624
PsiI TTATAA 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 161, 508
PspGI CCWGG 2 cut(s) 161, 508
PspN4I GGNNCC 2 cut(s) 6, 573
PspPI GGNCC 1 cut(s) 4
PsrI GAACNNNNNNTAC 2 cut(s) 158, 190
PsuI RGATCY 3 cut(s) 423, 571, 805
RsaI GTAC 5 cut(s) 30, 255, 542, 589, 692
RsaNI GTAC 5 cut(s) 29, 254, 541, 588, 691
RseI CAYNNNNRTG 1 cut(s) 663
SapI GCTCTTC 2 cut(s) 225, 294
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 7 cut(s) 286, 423, 571, 805, 813, 949, 1095
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 1 cut(s) 949
ScrFI CCNGG 2 cut(s) 163, 510
SfcI CTRYAG 1 cut(s) 355
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 663
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 8 cut(s) 24, 117, 129, 530, 739, 836, 887, 968
SseBI AGGCCT 1 cut(s) 508
SsiI CCGC 2 cut(s) 594, 685
SspI AATATT 2 cut(s) 583, 1027
SspMI CTAG 4 cut(s) 591, 662, 848, 1068
StuI AGGCCT 1 cut(s) 508
StyD4I CCNGG 2 cut(s) 161, 508
StyI CCWWGG 2 cut(s) 673, 1046
TaaI ACNGT 3 cut(s) 284, 551, 1113
TaiI ACGT 2 cut(s) 846, 932
TaqI TCGA 1 cut(s) 243
TasI AATT 8 cut(s) 24, 117, 129, 530, 739, 836, 887, 968
TatI WGTACW 1 cut(s) 587
TfiI GAWTC 2 cut(s) 92, 1071
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 1 cut(s) 264
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 5 cut(s) 256, 353, 484, 996, 1008
TspGWI ACGGA 1 cut(s) 564
TspRI CASTG 1 cut(s) 264
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 739, 887
XspI CTAG 4 cut(s) 591, 662, 848, 1068
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.